Gene Expression Omnibus

Gene Expression Omnibus (GEO) is an online biochemistry database owned by the National Center for Biotechnology Information that lists data from gene expression analyzes.

The Gene Expression Omnibus lists, among other things, raw data from RNA-Seq and microarrays that were generated in high-throughput processes . The raw data from microarrays fulfill the MIAME Criteria (from English minimum information about a microarray experiment ). These GEO data are freely accessible and functionally connoted and are formatted as GeoDatasetRecords (GDS format) by GEO employees . Profiles of individual genes can be extracted from this.

Web links

Gene Expression Omnibus database.

Individual evidence

↑ R. Edgar, M. Domrachev, AE Lash: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. In: Nucleic acids research. Volume 30, Number 1, January 2002, pp. 207-210, ISSN 1362-4962 . PMID 11752295 . PMC 99122 (free full text).
↑ T. Barrett, SE Wilhite, P. Ledoux, C. Evangelista, IF Kim, M. Tomashevsky, KA Marshall, KH Phillippy, PM Sherman, M. Holko, A. Yefanov, H. Lee, N. Zhang, CL Robertson , N. Serova, S. Davis, A. Soboleva: NCBI GEO: archive for functional genomics data sets update. In: Nucleic acids research. Volume 41, Database issue January 2013, pp. D991-D995, ISSN 1362-4962 . doi : 10.1093 / nar / gks1193 . PMID 23193258 . PMC 3531084 (free full text).
↑ A. Brazma, P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman, C. Stoeckert, J. Aach, W. Ansorge, CA Ball, HC Causton, T. Gaasterland, P. Glenisson, FC Holstege, IF Kim, V. Markowitz, JC Matese, H. Parkinson, A. Robinson, U. Sarkans, S. Schulze-Kremer, J. Stewart, R. Taylor, J. Vilo, M. Vingron: Minimum information about a microarray experiment (MIAME) -toward standards for microarray data. In: Nature genetics. Volume 29, Number 4, December 2001, pp. 365-371, ISSN 1061-4036 . doi : 10.1038 / ng1201-365 . PMID 11726920 .

[1] R. Edgar, M. Domrachev, AE Lash: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. In: Nucleic acids research. Volume 30, Number 1, January 2002, pp. 207-210, ISSN 1362-4962 . PMID 11752295 . PMC 99122 (free full text).

[2] T. Barrett, SE Wilhite, P. Ledoux, C. Evangelista, IF Kim, M. Tomashevsky, KA Marshall, KH Phillippy, PM Sherman, M. Holko, A. Yefanov, H. Lee, N. Zhang, CL Robertson , N. Serova, S. Davis, A. Soboleva: NCBI GEO: archive for functional genomics data sets update. In: Nucleic acids research. Volume 41, Database issue January 2013, pp. D991-D995, ISSN 1362-4962 . doi : 10.1093 / nar / gks1193 . PMID 23193258 . PMC 3531084 (free full text).

[3] A. Brazma, P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman, C. Stoeckert, J. Aach, W. Ansorge, CA Ball, HC Causton, T. Gaasterland, P. Glenisson, FC Holstege, IF Kim, V. Markowitz, JC Matese, H. Parkinson, A. Robinson, U. Sarkans, S. Schulze-Kremer, J. Stewart, R. Taylor, J. Vilo, M. Vingron: Minimum information about a microarray experiment (MIAME) -toward standards for microarray data. In: Nature genetics. Volume 29, Number 4, December 2001, pp. 365-371, ISSN 1061-4036 . doi : 10.1038 / ng1201-365 . PMID 11726920 .