MIAME

MIAME ( English Minimum Information About a Microarray Experiment , minimal information about a microarray experiment) is a quality standard for microarrays .

properties

MIAME was developed in 2001 by the Functional Genomics Data Society (FGED). The extent of necessary information is used for by MIAME reproducibility of microarray - experiments defined. The output format used is not defined. There are various programs for displaying and processing MIAME data, e.g. B. Annotare, MAGE-TAB, KUTE-BASE, MicroGen, MIAMExpress, Gene Traffic, Ipsogen Cancer Profiler, BASE, GeneData Expressionist, Partisan Array LIMS, LIMaS, Gene Director, GeneSpring and GeNet, MCHIPS, maxd, GenoWiz, RAD, GenePix , TeraGenomics, almaZen, GeneSifter, SeqExpress, MIAME Spice, ArrayHub, Feature Extraction, TM4, SAS Microarray, GenStat, GeneMaths XT and Tab2MAGE. One database for MIAME data is the Gene Expression Omnibus . Some other proteomics methods are defined according to MIAPE standards.

Web links

Functional Genomics Data Society (FGED) homepage . Retrieved June 25, 2014.

Individual evidence

↑ A. Brazma: Minimum Information About a Microarray Experiment (MIAME) -successes, failures, challenges. In: TheScientificWorldJournal. Volume 9, 2009, pp. 420-423, ISSN 1537-744X . doi : 10.1100 / tsw.2009.57 . PMID 19484163 .
↑ A. Brazma, P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman, C. Stoeckert, J. Aach, W. Ansorge, CA Ball, HC Causton, T. Gaasterland, P. Glenisson, FC Holstege, IF Kim, V. Markowitz, JC Matese, H. Parkinson, A. Robinson, U. Sarkans, S. Schulze-Kremer, J. Stewart, R. Taylor, J. Vilo, M. Vingron: Minimum information about a microarray experiment (MIAME) -toward standards for microarray data. In: Nature genetics. Volume 29, Number 4, December 2001, pp. 365-371, ISSN 1061-4036 . doi : 10.1038 / ng1201-365 . PMID 11726920 .
↑ S. Oliver: On the MIAME Standards and Central Repositories of Microarray Data. In: Comparative and functional genomics. Volume 4, number 1, 2003, p. 1, ISSN 1531-6912 . doi : 10.1002 / cfg.238 . PMID 18629115 . PMC 2447402 (free full text).

[1] A. Brazma: Minimum Information About a Microarray Experiment (MIAME) -successes, failures, challenges. In: TheScientificWorldJournal. Volume 9, 2009, pp. 420-423, ISSN 1537-744X . doi : 10.1100 / tsw.2009.57 . PMID 19484163 .

[2] A. Brazma, P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman, C. Stoeckert, J. Aach, W. Ansorge, CA Ball, HC Causton, T. Gaasterland, P. Glenisson, FC Holstege, IF Kim, V. Markowitz, JC Matese, H. Parkinson, A. Robinson, U. Sarkans, S. Schulze-Kremer, J. Stewart, R. Taylor, J. Vilo, M. Vingron: Minimum information about a microarray experiment (MIAME) -toward standards for microarray data. In: Nature genetics. Volume 29, Number 4, December 2001, pp. 365-371, ISSN 1061-4036 . doi : 10.1038 / ng1201-365 . PMID 11726920 .

[3] S. Oliver: On the MIAME Standards and Central Repositories of Microarray Data. In: Comparative and functional genomics. Volume 4, number 1, 2003, p. 1, ISSN 1531-6912 . doi : 10.1002 / cfg.238 . PMID 18629115 . PMC 2447402 (free full text).