MIAPE

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MIAPE ( English Minimum Information About a proteomics experiment , minimal information about a proteomics experiment ') is a quality standard for proteomics experiments.

properties

MIAPE was developed in 2006 by the Proteomics Standards Initiative of the Human Proteome Organization (HUPO). MIAPE defines the amount of information necessary for the reproducibility of experiments in the field of proteomics. The output format used is not defined by MIAPE, but by the Proteomics Standard Initiative (in * ML format). The implementation of the experiments is not defined. There are various programs for displaying and processing MIAME data. The areas of methods covered by MIAPE are gel electrophoresis , sample preparation, mass spectrometry , molecular interactions and general. In contrast, data from microarray experiments are generated according to the MIAME standard, medical diagnoses according to the STARD standard. MIAPEGelDB, PRIDE and ProteoRed MIAPE Generator are databases for MIAPE data.

Web links

Individual evidence

  1. ↑ CF Taylor: Minimum reporting requirements for proteomics: a MIAPE primer. In: Proteomics. Volume 6 Suppl 2, September 2006, pp. 39-44, ISSN  1615-9861 . doi : 10.1002 / pmic.200600549 . PMID 17031795 .
  2. ↑ CF Taylor, NW Paton, KS Lilley, PA Binz, RK Julian, AR Jones, W. Zhu, R. Apweiler, R. Aebersold, EW Deutsch, MJ Dunn, AJ Heck, A. Leitner, M. Macht, M. Mann, L. Martens, TA Neubert, SD Patterson, P. Ping, SL Seymour, P. Souda, A. Tsugita, J. Vandekerckhove, TM Vondriska, JP Whitelegge, MR Wilkins, I. Xenarios, JR Yates, H. Hermjakob : The minimum information about a proteomics experiment (MIAPE). In: Nature Biotechnology . Volume 25, Number 8, August 2007, pp. 887-893, ISSN  1087-0156 . doi : 10.1038 / nbt1329 . PMID 17687369 .
  3. ^ S. Martínez-Bartolomé, PA Binz, JP Albar: The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative. In: Methods in molecular biology (Clifton, NJ). Volume 1072, 2014, pp. 765-780, ISSN  1940-6029 . doi : 10.1007 / 978-1-62703-631-3_53 . PMID 24136562 .
  4. ↑ H Hermjakob: The HUPO Proteomics Standards Initiative - Overcoming the fragmentation of Proteomics Data . In: Practical Proteomics . 6, No. S2, 2006, pp. 34-38. doi : 10.1002 / pmic.200600537 . PMID 17031794 .
  5. ↑ Chris Taylor: Minimum Reporting Requirements for Proteomics: A MIAPE Primer . In: Practical Proteomics . 6, No. S2, 2006, pp. 39-44. doi : 10.1002 / pmic.200600549 . PMID 17031795 .
  6. ↑ Alvis Brazma, Pascal Hingamp, John Quackenbush, Gavin Sherlock, Paul Spellman, Chris Stoeckert, John Aach, Wilhelm Ansorge, Catherine A. Ball, Helen C. Causton, Terry Gaasterland, Patrick Glenisson, Frank CP Holstege, Irene F. Kim, Victor Markowitz, John C. Matese, Helen Parkinson, Alan Robinson, Ugis Sarkans, Steffen Schulze-Kremer, Jason Stewart, Ronald Taylor, Jaak Vilo, Martin Vingron: Minimum information about a microarray experiment (MIAME) —toward standards for microarray data . In: Nat Genet . 29, No. 4, December 2001, ISSN  1061-4036 , pp. 365-371. doi : 10.1038 / ng1201-365 . PMID 11726920 .
  7. ↑ Patrick M. Bossuyt, Johannes B. Reitsma, David E. Bruns, Constantine A. Gatsonis, Paul P. Glasziou, Les M. Irwig, David Moher, Drummond Rennie, Henrica CW de Vet, Jeroen G. Lijmer: The STARD Statement for Reporting Studies of Diagnostic Accuracy: Explanation and Elaboration . In: Clin Chem . 49, No. 1, January 1, 2003, pp. 7-18. doi : 10.1373 / 49.1.7 . PMID 12507954 . Retrieved January 13, 2009.
  8. ↑ JA Medina-Aunon, S. Martínez-Bartolomé, MA López-García, E. Salazar, R. Navajas, AR Jones, A. Paradela, JP Albar: The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards. In: Molecular & cellular proteomics: MCP. Volume 10, Number 10, October 2011, pp. M111.008334, ISSN  1535-9484 . doi : 10.1074 / mcp.M111.008334 . PMID 21983993 . PMC 3205864 (free full text).