Thermoplasmatales: Difference between revisions
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In [[alpha taxonomy|taxonomy]], the '''Thermoplasmatales''' are an [[order (biology)|order]] of the [[Thermoplasmata]].<ref>See the [[National Center for Biotechnology Information|NCBI]] [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2301 webpage on Thermoplasmatales]. Data extracted from the {{cite web | url=ftp://ftp.ncbi.nih.gov/pub/taxonomy/ | title=NCBI taxonomy resources | publisher=[[National Center for Biotechnology Information]] | accessdate=2007-03-19}}</ref> All are [[acidophile]]s, growing optimally at pH below 2. ''[[Picrophilus]]'' is currently the most [[acidophile|acidophilic]] of all known organisms, being capable of growing at a pH of -0.06.<ref>[https://books.google.com/books?id=qdjoTGAvrkkC&pg=PA57&lpg=PA57&dq=picrophilus+%22-0.06%22&source=bl&ots=-QoE-Gm98d&sig=S6509kGJi7kliQ0pQXoGpNrB1Ys&hl=ja&ei=Q57MSpP5K4zm6gOY2_GHAw&sa=X&oi=book_result&ct=result&resnum=34#v=onepage&q=picrophilus%20%22-0.06%22&f=false Life in the Universe: Expectations and Constraints ]</ref> Many of these organisms do not contain a cell wall, although this is not true in the case of ''[[Picrophilus]]''. Most |
In [[alpha taxonomy|taxonomy]], the '''Thermoplasmatales''' are an [[order (biology)|order]] of the [[Thermoplasmata]].<ref>See the [[National Center for Biotechnology Information|NCBI]] [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2301 webpage on Thermoplasmatales]. Data extracted from the {{cite web | url=ftp://ftp.ncbi.nih.gov/pub/taxonomy/ | title=NCBI taxonomy resources | publisher=[[National Center for Biotechnology Information]] | accessdate=2007-03-19}}</ref> All are [[acidophile]]s, growing optimally at pH below 2. ''[[Picrophilus]]'' is currently the most [[acidophile|acidophilic]] of all known organisms, being capable of growing at a pH of -0.06.<ref>[https://books.google.com/books?id=qdjoTGAvrkkC&pg=PA57&lpg=PA57&dq=picrophilus+%22-0.06%22&source=bl&ots=-QoE-Gm98d&sig=S6509kGJi7kliQ0pQXoGpNrB1Ys&hl=ja&ei=Q57MSpP5K4zm6gOY2_GHAw&sa=X&oi=book_result&ct=result&resnum=34#v=onepage&q=picrophilus%20%22-0.06%22&f=false Life in the Universe: Expectations and Constraints ]</ref> Many of these organisms do not contain a cell wall, although this is not true in the case of ''[[Picrophilus]]''. Most members of the Thermotoplasmata are [[thermophilic]]. |
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==Phylogeny== |
==Phylogeny== |
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The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref>{{cite web | author=J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota | title=Thermoplasmataceae | accessdate=2011-11-17 | publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) |
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref>{{cite web | author=J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota | title=Thermoplasmataceae | accessdate=2011-11-17 | publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) | deadurl=yes | archiveurl=https://web.archive.org/web/20110613224152/http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota | archivedate=2011-06-13 | df= }}</ref> and [[National Center for Biotechnology Information]] (NCBI)<ref>{{cite web |author = Sayers|display-authors = etal| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=183967&lvl=4&lin |title=Thermoplasmataceae |accessdate=2011-06-05 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database}}</ref> |
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and the phylogeny is based on 16S rRNA-based LTP release 106 by [['The All-Species Living Tree' Project]].<ref>[[All-Species Living Tree Project]].{{cite web | url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_106/LTPs106_SSU_tree.pdf | title=16S rRNA-based LTP release 106 (full tree) | publisher=[[Silva Comprehensive Ribosomal RNA Database]] |
and the phylogeny is based on 16S rRNA-based LTP release 106 by [['The All-Species Living Tree' Project]].<ref>[[All-Species Living Tree Project]].{{cite web | url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_106/LTPs106_SSU_tree.pdf | title=16S rRNA-based LTP release 106 (full tree) | publisher=[[Silva Comprehensive Ribosomal RNA Database]] | accessdate=2011-11-17}}</ref> |
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Revision as of 00:23, 7 July 2019
| Thermoplasmatales | |
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| Scientific classification | |
| Domain: | |
| Kingdom: | |
| Phylum: | |
| Class: | Thermoplasmata Reysenbach 2002
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| Order: | Thermoplasmatales Reysenbach 2002
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| Families | |
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In taxonomy, the Thermoplasmatales are an order of the Thermoplasmata.[1] All are acidophiles, growing optimally at pH below 2. Picrophilus is currently the most acidophilic of all known organisms, being capable of growing at a pH of -0.06.[2] Many of these organisms do not contain a cell wall, although this is not true in the case of Picrophilus. Most members of the Thermotoplasmata are thermophilic.
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI)[4] and the phylogeny is based on 16S rRNA-based LTP release 106 by 'The All-Species Living Tree' Project.[5]
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Notes:
♠ Strains found at the National Center for Biotechnology Information (NCBI) but not listed in the List of Prokaryotic names with Standing in Nomenclature LPSN
References
- ^ See the NCBI webpage on Thermoplasmatales. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information. Retrieved 2007-03-19.
- ^ Life in the Universe: Expectations and Constraints
- ^ J.P. Euzéby. "Thermoplasmataceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Archived from the original on 2011-06-13. Retrieved 2011-11-17.
{{cite web}}: Unknown parameter|deadurl=ignored (|url-status=suggested) (help) - ^ Sayers; et al. "Thermoplasmataceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2011-06-05.
- ^ All-Species Living Tree Project."16S rRNA-based LTP release 106 (full tree)" (PDF). Silva Comprehensive Ribosomal RNA Database. Retrieved 2011-11-17.
- Madigan, M.T.; Martinko, J.M. (2005). Brock Biology of Microorganisms (11th ed.). Pearson Prentice Hall.
{{cite book}}: Unknown parameter|last-author-amp=ignored (|name-list-style=suggested) (help)
Further reading
Scientific journals
- Hubrt, Harald; Stetter, Karl O. (2006). Prokaryotes. pp. 101–102. doi:10.1007/0-387-30743-5_7. ISBN 978-0-387-25493-7.
{{cite book}}:|journal=ignored (help) - Oueriaghli, Nahid; Bejar, Victoria; Quesada, Emilia; Martinez-Checa, Fernando (2013). "Molecular Ecology Techniques Reveal Both Spatial and Temporal Variations in the Diversity of Archaeal Communities within the Athalassohaline Environment of Rambla Salada, Spain". Microbial Ecology. 66 (2): 297–311. doi:10.1007/s00248-013-0176-5. PMID 23354292.
- Paul, Kristina; Nonoh, James O.; Mikulski, Lena; Brune, Andreas (2012). ""Methanoplasmatales," Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens". Applied and Environmental Microbiology. 78 (23): 8245–8253. doi:10.1128/AEM.02193-12. PMC 3497382. PMID 23001661.
- Snelling, Timothy J; Genc, Bugra; McKain, Nest; Watson, Mick; Waters, Sinead M.; Creevey, Christopher J.; Wallace, R. John (2014). "Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods". PLoS ONE. 9 (9): e106491. Bibcode:2014PLoSO...9j6491S. doi:10.1371/journal.pone.0106491. PMC 4175461. PMID 25250654.
{{cite journal}}: CS1 maint: unflagged free DOI (link)
Scientific books
- Reysenbach, A-L (2001). "Order I. Thermoplasmatales ord. nov.". In DR Boone; RW Castenholz (eds.). Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria (2nd ed.). New York: Springer Verlag. p. 169. ISBN 978-0-387-98771-2.
- Reysenbach, A-L (2001). "Class IV. Thermoplasmata class. nov.". In DR Boone; RW Castenholz (eds.). Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria (2nd ed.). New York: Springer Verlag. p. 169. ISBN 978-0-387-98771-2.
Scientific databases
External links
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