Thermoplasmatales: Difference between revisions
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==Phylogeny== |
==Phylogeny== |
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The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref>{{cite web | author=J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota | title=Thermoplasmataceae | access-date=2011-11-17 | publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) |
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref>{{cite web | author=J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota | title=Thermoplasmataceae | access-date=2011-11-17 | publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) | url-status=dead | archiveurl=https://web.archive.org/web/20110613224152/http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota | archivedate=2011-06-13 }}</ref> and [[National Center for Biotechnology Information]] (NCBI).<ref name=NCBI>{{cite web |author = Sayers|display-authors = etal| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=183967&lvl=4&lin |title=Thermoplasmataceae |access-date=2011-06-05 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database}}</ref> |
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! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_06_2022<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree |access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_06_2022 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf |access-date=10 May 2023}}</ref> |
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_06_2022<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree |access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_06_2022 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf |access-date=10 May 2023}}</ref> |
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! colspan=1 | 53 marker proteins based [[Genome Taxonomy Database|GTDB]] 08-RS214<ref name="about">{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="tree">{{cite web |title=ar53_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref> |
! colspan=1 | 53 marker proteins based [[Genome Taxonomy Database|GTDB]] 08-RS214<ref name="about">{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="tree">{{cite web |title=ar53_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref> |
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* {{cite book | last = Reysenbach | first = A-L | date = 2001 | chapter = Order I. Thermoplasmatales ord. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 | page = [https://archive.org/details/bergeysmanualofs00boon/page/169 169] | chapter-url = https://archive.org/details/bergeysmanualofs00boon/page/169 }} |
* {{cite book | last = Reysenbach | first = A-L | date = 2001 | chapter = Order I. Thermoplasmatales ord. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 | page = [https://archive.org/details/bergeysmanualofs00boon/page/169 169] | chapter-url = https://archive.org/details/bergeysmanualofs00boon/page/169 }} |
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* {{cite book | last = Reysenbach | first = A-L | date = 2001 | chapter = Class IV. Thermoplasmata class. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 | page = [https://archive.org/details/bergeysmanualofs00boon/page/169 169] | chapter-url = https://archive.org/details/bergeysmanualofs00boon/page/169 }} |
* {{cite book | last = Reysenbach | first = A-L | date = 2001 | chapter = Class IV. Thermoplasmata class. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 | page = [https://archive.org/details/bergeysmanualofs00boon/page/169 169] | chapter-url = https://archive.org/details/bergeysmanualofs00boon/page/169 }} |
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===Scientific databases=== |
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{{Taxonomic references|taxon=Thermoplasmatales}} |
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==External links== |
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{{Archaea classification}} |
{{Archaea classification}} |
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[[Category:Archaea taxonomic orders]] |
[[Category:Archaea taxonomic orders]] |
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[[Category:Euryarchaeota]] |
[[Category:Euryarchaeota]] |
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{{Euryarchaeota-stub}} |
{{Euryarchaeota-stub}} |
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Latest revision as of 16:15, 13 February 2024
| Thermoplasmatales | |
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| Cuniculiplasma divulgatum | |
| Scientific classification | |
| Domain: | |
| Kingdom: | |
| Phylum: | |
| Class: | |
| Order: | Thermoplasmatales Reysenbach 2002
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| Families | |
| Synonyms | |
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In taxonomy, the Thermoplasmatales are an order of the Thermoplasmata.[1] All are acidophiles, growing optimally at pH below 2. Picrophilus is currently the most acidophilic of all known organisms, being capable of growing at a pH of -0.06.[2] Many of these organisms do not contain a cell wall, although this is not true in the case of Picrophilus. Most members of the Thermotoplasmata are thermophilic.
Phylogeny[edit]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI).[1]
| 16S rRNA based LTP_06_2022[4][5][6] | 53 marker proteins based GTDB 08-RS214[7][8][9] |
|---|---|
See also[edit]
References[edit]
- ^ a b Sayers; et al. "Thermoplasmataceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2011-06-05.
- ^ Life in the Universe: Expectations and Constraints
- ^ J.P. Euzéby. "Thermoplasmataceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Archived from the original on 2011-06-13. Retrieved 2011-11-17.
- ^ "The LTP". Retrieved 10 May 2023.
- ^ "LTP_all tree in newick format". Retrieved 10 May 2023.
- ^ "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
- Madigan, M.T. & Martinko, J.M. (2005). Brock Biology of Microorganisms (11th ed.). Pearson Prentice Hall.
Further reading[edit]
Scientific journals[edit]
- Hubrt, Harald; Stetter, Karl O. (2006). Prokaryotes. pp. 101–102. doi:10.1007/0-387-30743-5_7. ISBN 978-0-387-25493-7.
{{cite book}}:|journal=ignored (help) - Oueriaghli, Nahid; Bejar, Victoria; Quesada, Emilia; Martinez-Checa, Fernando (2013). "Molecular Ecology Techniques Reveal Both Spatial and Temporal Variations in the Diversity of Archaeal Communities within the Athalassohaline Environment of Rambla Salada, Spain". Microbial Ecology. 66 (2): 297–311. doi:10.1007/s00248-013-0176-5. PMID 23354292. S2CID 18200481.
- Paul, Kristina; Nonoh, James O.; Mikulski, Lena; Brune, Andreas (2012). ""Methanoplasmatales," Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens". Applied and Environmental Microbiology. 78 (23): 8245–8253. Bibcode:2012ApEnM..78.8245P. doi:10.1128/AEM.02193-12. PMC 3497382. PMID 23001661.
- Snelling, Timothy J; Genc, Bugra; McKain, Nest; Watson, Mick; Waters, Sinead M.; Creevey, Christopher J.; Wallace, R. John (2014). "Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods". PLOS ONE. 9 (9): e106491. Bibcode:2014PLoSO...9j6491S. doi:10.1371/journal.pone.0106491. PMC 4175461. PMID 25250654.
Scientific books[edit]
- Reysenbach, A-L (2001). "Order I. Thermoplasmatales ord. nov.". In DR Boone; RW Castenholz (eds.). Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria (2nd ed.). New York: Springer Verlag. p. 169. ISBN 978-0-387-98771-2.
- Reysenbach, A-L (2001). "Class IV. Thermoplasmata class. nov.". In DR Boone; RW Castenholz (eds.). Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria (2nd ed.). New York: Springer Verlag. p. 169. ISBN 978-0-387-98771-2.
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