Thermoplasmatales: Difference between revisions
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! colspan=1 | 16S rRNA |
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_06_2022<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree |access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_06_2022 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf |access-date=10 May 2023}}</ref> |
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! colspan=1 | 53 marker proteins based [[Genome Taxonomy Database|GTDB]] |
! colspan=1 | 53 marker proteins based [[Genome Taxonomy Database|GTDB]] 08-RS214<ref name="about">{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="tree">{{cite web |title=ar53_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref> |
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|label1=Thermoplasmatales |
|label1=Thermoplasmatales |
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|1={{clade |
|1={{clade |
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|1={{clade |
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|label1=[[Thermoplasmataceae]] |
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|1=''[[Thermoplasma]]'' |
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|2={{clade |
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|1=''[[Thermogymnomonas]]'' |
|1=''[[Thermogymnomonas]]'' |
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|2={{clade |
|2={{clade |
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|1= |
|1={{clade |
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|label1=[[Cuniculiplasmataceae]] |
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|1=''[[Cuniculiplasma]]'' |
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|2={{clade |
|2={{clade |
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|label1=[[Picrophilaceae]] |
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|1=''[[Picrophilus]]'' |
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|label2= [[Ferroplasmaceae|Ferroplasmataceae]] |
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|2={{clade |
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|1=''[[Acidiplasma]]'' |
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|2=''[[Ferroplasma]]'' |
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Revision as of 02:12, 4 July 2023
| Thermoplasmatales | |
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| Cuniculiplasma divulgatum | |
| Scientific classification | |
| Domain: | |
| Kingdom: | |
| Phylum: | |
| Class: | |
| Order: | Thermoplasmatales Reysenbach 2002
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| Families | |
| Synonyms | |
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In taxonomy, the Thermoplasmatales are an order of the Thermoplasmata.[1] All are acidophiles, growing optimally at pH below 2. Picrophilus is currently the most acidophilic of all known organisms, being capable of growing at a pH of -0.06.[2] Many of these organisms do not contain a cell wall, although this is not true in the case of Picrophilus. Most members of the Thermotoplasmata are thermophilic.
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI).[1]
| 16S rRNA based LTP_06_2022[4][5][6] | 53 marker proteins based GTDB 08-RS214[7][8][9] |
|---|---|
See also
References
- ^ a b Sayers; et al. "Thermoplasmataceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2011-06-05.
- ^ Life in the Universe: Expectations and Constraints
- ^ J.P. Euzéby. "Thermoplasmataceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Archived from the original on 2011-06-13. Retrieved 2011-11-17.
- ^ "The LTP". Retrieved 10 May 2023.
- ^ "LTP_all tree in newick format". Retrieved 10 May 2023.
- ^ "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
- Madigan, M.T. & Martinko, J.M. (2005). Brock Biology of Microorganisms (11th ed.). Pearson Prentice Hall.
Further reading
Scientific journals
- Hubrt, Harald; Stetter, Karl O. (2006). Prokaryotes. pp. 101–102. doi:10.1007/0-387-30743-5_7. ISBN 978-0-387-25493-7.
{{cite book}}:|journal=ignored (help) - Oueriaghli, Nahid; Bejar, Victoria; Quesada, Emilia; Martinez-Checa, Fernando (2013). "Molecular Ecology Techniques Reveal Both Spatial and Temporal Variations in the Diversity of Archaeal Communities within the Athalassohaline Environment of Rambla Salada, Spain". Microbial Ecology. 66 (2): 297–311. doi:10.1007/s00248-013-0176-5. PMID 23354292. S2CID 18200481.
- Paul, Kristina; Nonoh, James O.; Mikulski, Lena; Brune, Andreas (2012). ""Methanoplasmatales," Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens". Applied and Environmental Microbiology. 78 (23): 8245–8253. Bibcode:2012ApEnM..78.8245P. doi:10.1128/AEM.02193-12. PMC 3497382. PMID 23001661.
- Snelling, Timothy J; Genc, Bugra; McKain, Nest; Watson, Mick; Waters, Sinead M.; Creevey, Christopher J.; Wallace, R. John (2014). "Diversity and Community Composition of Methanogenic Archaea in the Rumen of Scottish Upland Sheep Assessed by Different Methods". PLOS ONE. 9 (9): e106491. Bibcode:2014PLoSO...9j6491S. doi:10.1371/journal.pone.0106491. PMC 4175461. PMID 25250654.
Scientific books
- Reysenbach, A-L (2001). "Order I. Thermoplasmatales ord. nov.". In DR Boone; RW Castenholz (eds.). Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria (2nd ed.). New York: Springer Verlag. p. 169. ISBN 978-0-387-98771-2.
- Reysenbach, A-L (2001). "Class IV. Thermoplasmata class. nov.". In DR Boone; RW Castenholz (eds.). Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria (2nd ed.). New York: Springer Verlag. p. 169. ISBN 978-0-387-98771-2.
Scientific databases
External links
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