Acidianus: Difference between revisions
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In [[alpha taxonomy|taxonomy]], '''''Acidianus''''' is a [[genus (biology)|genus]] of the [[Sulfolobaceae]].<ref name=NCBI |
In [[alpha taxonomy|taxonomy]], '''''Acidianus''''' is a [[genus (biology)|genus]] of the [[Sulfolobaceae]].<ref name=NCBI /> |
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==Phylogeny== |
==Phylogeny== |
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The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) <ref>{{cite web|author=J.P. Euzéby |url=https://lpsn.dsmz.de/genus/acidianus |title=Acidianus | |
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) <ref>{{cite web|author=J.P. Euzéby |url=https://lpsn.dsmz.de/genus/acidianus |title=Acidianus |access-date=10 May 2023 |publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)}}</ref> and [[National Center for Biotechnology Information]] (NCBI)<ref name=NCBI>{{cite web |author = Sayers| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=12914&lvl=3&keep=1&srchmode=1&unlock |title=Acidianus |access-date=10 May 2023 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database|display-authors=etal}}</ref> |
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! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_06_2022<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree |access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_06_2022 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf |access-date=10 May 2023}}</ref> |
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_06_2022<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree |access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_06_2022 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf |access-date=10 May 2023}}</ref> |
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! colspan=1 | 53 marker proteins based [[Genome Taxonomy Database|GTDB]] 08-RS214<ref name="about">{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="tree">{{cite web |title=ar53_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref> |
! colspan=1 | 53 marker proteins based [[Genome Taxonomy Database|GTDB]] 08-RS214<ref name="about">{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="tree">{{cite web |title=ar53_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref> |
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==References== |
==References== |
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{{Reflist |
{{Reflist}} |
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==Further reading== |
==Further reading== |
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* {{ cite journal | doi = 10.1099/00207713-36-4-559 | author = Segerer A | author2 = Neuner AM | author3 = Kristjansson JK | author4 = Stetter KO | date = 1986 | title = Acidianus infernus gen. nov., sp. nov., and Acidianus brierleyi comb. nov.: facultatively aerobic, extremely acidophilic thermophilic sulfur-metabolizing archaebacteria | journal = Int. J. Syst. Bacteriol. | volume = 36 | pages = 559–564 | issue = 4 | doi-access = free }} |
* {{ cite journal | doi = 10.1099/00207713-36-4-559 | author = Segerer A | author2 = Neuner AM | author3 = Kristjansson JK | author4 = Stetter KO | date = 1986 | title = Acidianus infernus gen. nov., sp. nov., and Acidianus brierleyi comb. nov.: facultatively aerobic, extremely acidophilic thermophilic sulfur-metabolizing archaebacteria | journal = Int. J. Syst. Bacteriol. | volume = 36 | pages = 559–564 | issue = 4 | doi-access = free }} |
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* {{ cite journal | author = Zillig W | author2 = Yeats S | author3 = Holz I | author4 = Bock A | author5 = Rettenberger M | author6 = Gropp F | author7 = Simon G | date = 1986 | title = Desulfurolobus ambivalens, gen. nov., sp. nov., an autotrophic archaebacterium facultatively oxidizing or reducing sulfur | journal = Syst. Appl. Microbiol. | volume = 8 | issue = 3 | pages = 197–203 | doi=10.1016/s0723-2020(86)80077-7}} |
* {{ cite journal | author = Zillig W | author2 = Yeats S | author3 = Holz I | author4 = Bock A | author5 = Rettenberger M | author6 = Gropp F | author7 = Simon G | date = 1986 | title = Desulfurolobus ambivalens, gen. nov., sp. nov., an autotrophic archaebacterium facultatively oxidizing or reducing sulfur | journal = Syst. Appl. Microbiol. | volume = 8 | issue = 3 | pages = 197–203 | doi=10.1016/s0723-2020(86)80077-7}} |
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* {{cite journal|last1=Giaveno|first1=M. Alejandra|last2=Urbieta|first2=M. Sofia|last3=Ulloa|first3=J. Ricardo|last4=Toril|first4=Elena Gonzalez|last5=Donati|first5=Edgardo R.|title=Physiologic Versatility and Growth Flexibility as the Main Characteristics of a Novel Thermoacidophilic Acidianus Strain Isolated from Copahue Geothermal Area in Argentina|journal=Environmental Microbiology|date=3 October 2012|volume=65|issue=2|pages=336–346|doi=10.1007/s00248-012-0129-4|pmid=23052926|s2cid=12798711}} |
* {{cite journal|last1=Giaveno|first1=M. Alejandra|last2=Urbieta|first2=M. Sofia|last3=Ulloa|first3=J. Ricardo|last4=Toril|first4=Elena Gonzalez|last5=Donati|first5=Edgardo R.|title=Physiologic Versatility and Growth Flexibility as the Main Characteristics of a Novel Thermoacidophilic Acidianus Strain Isolated from Copahue Geothermal Area in Argentina|journal=Environmental Microbiology|date=3 October 2012|volume=65|issue=2|pages=336–346|doi=10.1007/s00248-012-0129-4|pmid=23052926|s2cid=12798711|hdl=11336/4310|hdl-access=free}} |
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*{{cite journal|last1=Li|first1=Sen|last2=Yang|first2=Jie|title=System analysis of synonymous codon usage biases in archaeal virus genomes|journal=Journal of Theoretical Biology|date=21 August 2014|volume= 355|pages=128–129|doi=10.1016/j.jtbi.2014.03.022|pmid=24685889|pmc=7094158|bibcode=2014JThBi.355..128L}} |
*{{cite journal|last1=Li|first1=Sen|last2=Yang|first2=Jie|title=System analysis of synonymous codon usage biases in archaeal virus genomes|journal=Journal of Theoretical Biology|date=21 August 2014|volume= 355|pages=128–129|doi=10.1016/j.jtbi.2014.03.022|pmid=24685889|pmc=7094158|bibcode=2014JThBi.355..128L}} |
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===Scientific books=== |
===Scientific books=== |
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* {{ cite book | last = Stetter | first = KO | date = 1989 | chapter = Order III. Sulfolobales ord. nov. Family Sulfolobaceae fam. nov. | title = Bergey's Manual of Systematic Bacteriology | volume = 3 | edition = 1st |editor = JT Staley |editor2 = MP Bryant |editor3 = N Pfennig |editor4 = JG Holt | pages = 169 | publisher = The Williams & Wilkins Co. | location = Baltimore}} |
* {{ cite book | last = Stetter | first = KO | date = 1989 | chapter = Order III. Sulfolobales ord. nov. Family Sulfolobaceae fam. nov. | title = Bergey's Manual of Systematic Bacteriology | volume = 3 | edition = 1st |editor = JT Staley |editor2 = MP Bryant |editor3 = N Pfennig |editor4 = JG Holt | pages = 169 | publisher = The Williams & Wilkins Co. | location = Baltimore}} |
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===Scientific databases=== |
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{{Taxonomic references|taxon=Acidianus}} |
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==External links== |
==External links== |
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{{Taxonomic links|microbe=yes|NCBI_taxID=12914|taxoname=Acidianus|LSPN_letter=a|LSPN_taxoname=acidianus}} |
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*[http://bacdive.dsmz.de/index.php?search=Acidianus&submit=Search ''Acidianus'' at Bac''Dive'' - the Bacterial Diversity Metadatabase] |
*[http://bacdive.dsmz.de/index.php?search=Acidianus&submit=Search ''Acidianus'' at Bac''Dive'' - the Bacterial Diversity Metadatabase] |
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{{Archaea classification}} |
{{Archaea classification}} |
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{{Taxonbar|from=Q2823329}} |
{{Taxonbar|from=Q2823329}} |
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[[Category:Archaea genera]] |
[[Category:Archaea genera]] |
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[[Category:Thermoproteota]] |
[[Category:Thermoproteota]] |
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{{archaea-stub}} |
{{archaea-stub}} |
Latest revision as of 16:27, 13 February 2024
Acidianus | |
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Acidianus convivator cell showing extrusion of Acidianus two-tailed virus particles. | |
Scientific classification | |
Domain: | |
Phylum: | |
Class: | |
Order: | |
Family: | |
Genus: | Acidianus Segerer, Neuner, Kristjansson & Stetter 1986
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Species | |
Synonyms | |
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In taxonomy, Acidianus is a genus of the Sulfolobaceae.[1]
Phylogeny[edit]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and National Center for Biotechnology Information (NCBI)[1]
16S rRNA based LTP_06_2022[3][4][5] | 53 marker proteins based GTDB 08-RS214[6][7][8] | ||||||||||||||||||||||||||||||||||||||||||||||||
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See also[edit]
References[edit]
- ^ a b Sayers; et al. "Acidianus". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 10 May 2023.
- ^ J.P. Euzéby. "Acidianus". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 10 May 2023.
- ^ "The LTP". Retrieved 10 May 2023.
- ^ "LTP_all tree in newick format". Retrieved 10 May 2023.
- ^ "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
Further reading[edit]
Scientific journals[edit]
- Segerer A; Neuner AM; Kristjansson JK; Stetter KO (1986). "Acidianus infernus gen. nov., sp. nov., and Acidianus brierleyi comb. nov.: facultatively aerobic, extremely acidophilic thermophilic sulfur-metabolizing archaebacteria". Int. J. Syst. Bacteriol. 36 (4): 559–564. doi:10.1099/00207713-36-4-559.
- Zillig W; Yeats S; Holz I; Bock A; Rettenberger M; Gropp F; Simon G (1986). "Desulfurolobus ambivalens, gen. nov., sp. nov., an autotrophic archaebacterium facultatively oxidizing or reducing sulfur". Syst. Appl. Microbiol. 8 (3): 197–203. doi:10.1016/s0723-2020(86)80077-7.
- Giaveno, M. Alejandra; Urbieta, M. Sofia; Ulloa, J. Ricardo; Toril, Elena Gonzalez; Donati, Edgardo R. (3 October 2012). "Physiologic Versatility and Growth Flexibility as the Main Characteristics of a Novel Thermoacidophilic Acidianus Strain Isolated from Copahue Geothermal Area in Argentina". Environmental Microbiology. 65 (2): 336–346. doi:10.1007/s00248-012-0129-4. hdl:11336/4310. PMID 23052926. S2CID 12798711.
- Li, Sen; Yang, Jie (21 August 2014). "System analysis of synonymous codon usage biases in archaeal virus genomes". Journal of Theoretical Biology. 355: 128–129. Bibcode:2014JThBi.355..128L. doi:10.1016/j.jtbi.2014.03.022. PMC 7094158. PMID 24685889.
Scientific books[edit]
- Stetter, KO (1989). "Order III. Sulfolobales ord. nov. Family Sulfolobaceae fam. nov.". In JT Staley; MP Bryant; N Pfennig; JG Holt (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 3 (1st ed.). Baltimore: The Williams & Wilkins Co. p. 169.
External links[edit]