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{{Short description|Family of archaea}}
{{Taxobox
{{Automatic taxobox
| domain = [[Archaea]]
| taxon = Methanobacteriaceae
| regnum = [[Euryarchaeota]]
| authority = Barker 1956
| phylum = [[Euryarchaeota]]
| subdivision_ranks = Genera
| classis = [[Methanobacteria]] <small>Boone 2002</small>
| subdivision =
| ordo = [[Methanobacteriales]] <br/><small>Balch and Wolfe 1981</small>
* ''[[Methanobacterium]]''
| familia = '''Methanobacteriaceae''' <br/><small>Barker 1956</small>
* ''[[Methanobrevibacter]]''
| subdivision_ranks = [[Genus (biology)|Genera]]
* ''[[Methanosphaera]]''
| subdivision =
* ''[[Methanothermobacter]]''
*''[[Methanobacterium]]'' <small>Kluyver and van Niel 1936</small>
*''[[Methanobrevibacter]]'' <small>Balch and Wolfe 1981</small>
*''[[Methanosphaera]]'' <small>Miller and Wolin 1985</small>
*''[[Methanothermobacter]]'' <small>Wasserfallen et al. 2000</small>
*''[[Methylosphaera]]'' <small>Bowman et al. 1998</small>
}}
}}


In [[alpha taxonomy|taxonomy]], the '''Methanobacteriaceae''' are a [[family (biology)|family]] of the [[Methanobacteriales]].<ref>See the [[National Center for Biotechnology Information|NCBI]] [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2159 webpage on Methanobacteriaceae]. Data extracted from the {{cite web | url=ftp://ftp.ncbi.nih.gov/pub/taxonomy/ | title=NCBI taxonomy resources | publisher=[[National Center for Biotechnology Information]] | accessdate=2007-03-19}}</ref>
'''Methanobacteriaceae''' are a [[family (biology)|family]] of [[archaea]]ns in the order [[Methanobacteriales]].<ref name=NCBI>{{cite web |author = Sayers|display-authors = etal| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=2159&lvl=3&lin=f&keep=1&srchmode=1&unlock |title=Methanobacteriaceae |access-date=23 February 2022|publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database}}</ref>


==Phylogeny==
==Phylogeny==
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref>{{cite web |author = J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota |title=Methanobacteriaceae | accessdate=2011-11-17 |publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) [http://www.bacterio.cict.fr/introduction.html]}}</ref> and [[National Center for Biotechnology Information]] (NCBI)<ref>{{cite web |author = Sayers|display-authors = etal| url=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=2159&lvl=3&lin |title=Methanobacteriaceae |accessdate=2011-06-05 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database [http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi]}}</ref>
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) <ref>{{cite web|author=J.P. Euzéby |url=https://lpsn.dsmz.de/family/methanobacteriaceae |title=Methanobacteriaceae |access-date=23 February 2022 |publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)}}</ref> and [[National Center for Biotechnology Information]] (NCBI).<ref name=NCBI />
and the phylogeny is based on 16S rRNA-based LTP release 106 by [['The All-Species Living Tree' Project]].<ref>[['The All-Species Living Tree' Project]].{{cite web | url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_106/LTPs106_SSU_tree.pdf | title=16S rRNA-based LTP release 106 (full tree) | publisher=[[Silva Comprehensive Ribosomal RNA Database]] [http://www.arb-silva.de/projects/living-tree] | accessdate=2011-11-17}}</ref>


{| class="wikitable"
{{Clade
|-
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_06_2022<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree |access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_06_2022 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf |access-date=10 May 2023}}</ref>
! colspan=1 | 53 marker proteins based [[Genome Taxonomy Database|GTDB]] 08-RS214<ref name="about">{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="tree">{{cite web |title=ar53_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref>
|-
| style="vertical-align:top|
{{Clade|style=font-size:90%; line-height:90%
|label1=Methanobacteriaceae
|1={{clade
|1={{clade
|label1=&nbsp; ''[[Methanothermobacter]]''
|1=''[[Methanothermobacter]]'' species-group 2
|1={{clade
|2={{clade
|1=?''[[Methanothermobacter crinale|M. crinale]]'' ♠ <small>Cheng et al. 2011</small>
|1=''[[Methanothermobacter]]''
|2={{clade
|2=?''[[Methanothermobacter tenebrarum|M. tenebrarum]]'' ♣ <small>Nakamura et al. 2012</small>
|1=''[[Methanobacterium]]'' species-group 2
|3=''[[Methanothermobacter marburgensis|M. marburgensis]]'' <small>Wasserfallen et al. 2000</small>
|4={{clade
|2={{clade
|1=''[[Methanobacterium]]''
|1=''[[Methanothermobacter wolfeii|M. wolfeii]]'' <small>(Winter et al. 1985) Wasserfallen et al. 2000</small>
|2=''[[Methanothermobacter thermautotrophicus|M. thermautotrophicus]]'' <small>(Zeikus and Wolfe 1972) Wasserfallen et al. 2000</small> (type sp.)
|3={{clade
|1=''[[Methanothermobacter defluvii|M. defluvii]]'' <small>(Kotelnikova et al. 1994) Boone 2002</small>
|2={{clade
|2={{clade
|1=''[[Methanosphaera]]''
|1=''[[Methanothermobacter thermoflexus|M. thermoflexus]]'' <small>(Kotelnikova et al. 1994) Boone 2002</small>
|2=''[[Methanobrevibacter]]''
|2=''[[Methanothermobacter thermophilus|M. thermophilus]]'' <small>(Laurinavichus et al. 1990) Boone 2002</small>
}}
}}
}}
}}
}}
}}
}}
}}
}}
|
{{Clade|style=font-size:90%; line-height:90%
|1={{clade
|1={{clade
|label1=Methanothermobacteraceae_A
|1=''[[Methanothermobacter]]'' species-group 2
}}
}}
|2={{clade
|2={{clade
|label1="Methanothermobacteraceae"
|1=?''[[Methanobacterium curvum]]'' ♠ <small>Sun et al. 2001</small>
|1=''[[Methanothermobacter]]''
|2=?''[[Methanobacterium espanolae]]'' <small>Patel et al. 1990</small>
|label2=Methanobacteriaceae
|3=?''[[Methanobacterium flexile]]'' <small>Zhu et al. 2011</small>
|2={{clade
|4=?''[[Methanobacterium kanagiense]]'' <small>Kitamura et al. 2011</small>
|5=?''[[Methanobacterium movens]]'' <small>Zhu et al. 2011</small>
|6=?''[[Methanobacterium thermaggregans]]'' <small>Blotevogel and Fischer 1988</small>
|7=?''[[Methanobacterium uliginosum]]'' ♦ <small>König 1985</small>
|8=''[[Methanobacterium aarhusense]]'' <small>Shlimon et al. 2004</small>
|9={{clade
|1={{clade
|1={{clade
|1=''[[Methanobacterium oryzae]]'' <small>Joulian et al. 2000</small>
|1=''[[Methanobacterium alcaliphilum]]''
|2={{clade
|2=''[[Methanobrevibacter]]''
|1=''[[Methanobacterium bryantii]]'' <small>Balch and Wolfe 1981 emend. Judicial Commission 1992</small>
|2={{clade
|1=''[[Methanobacterium arcticum]]'' <small>Shcherbakova et al. 2011</small>
|2=''[[Methanobacterium ivanovii]]'' <small>Jain et al. 1988</small>
|3=''[[Methanobacterium veterum]]'' <small>Krivushin et al. 2010</small>
}}
}}
}}
}}
|2={{clade
|2={{clade
|label1=&nbsp; ''[[Methanobacterium]]''
|1=''[[Methanobacterium]]'' species-group 2
|1={{clade
|1=''[[Methanobacterium congolense|M. congolense]]'' <small>Cuzin et al. 2001</small>
|2={{clade
|1=''[[Methanobacterium alcaliphilum|M. alcaliphilum]]'' <small>Worakit et al. 1986</small>
|2={{clade
|1={{clade
|1=''[[Methanobacterium formicicum|M. formicicum]]'' <small>Schnellen 1947 (Approved Lists 1980) emend. Judicial Commission 1992</small> (type sp.)
|2=''[[Methanobacterium palustre|M. palustre]]'' <small>Zellner et al. 1990</small>
}}
|2={{clade
|1=''[[Methanobacterium subterraneum|M. subterraneum]]'' <small>Kotelnikova et al. 1998</small>
|2={{clade
|1=''[[Methanobacterium ferruginis|M. ferruginis]]'' <small>Mori and Harayama 2011</small>
|2=''[[Methanobacterium petrolearium|M. petrolearium]]'' <small>Mori and Harayama 2011</small>
}}
}}
}}
}}
}}
|2={{clade
|2={{clade
|1=''[[Methanobacterium beijingense]]'' <small>Ma et al. 2005</small>
|1=''[[Methanosphaera]]''
|2={{clade
|2=''[[Methanobacterium]]''
|label1=&nbsp; ''[[Methanosphaera]]''
|1={{clade
|1=''[[Methanosphaera cuniculi|M. cuniculi]]'' <small>Biavati et al. 1990</small>
|2=''[[Methanosphaera stadtmanae|M. stadtmanae]]'' <small>Miller and Wolin 1985</small> (type sp.)
}}
|label2=&nbsp; ''[[Methanobrevibacter]]''
|2={{clade
|1=?''[[Methanobrevibacter oralis|M. oralis]]'' ♦ <small>Ferrari et al. 1995</small>
|2={{clade
|1=''[[Methanobrevibacter wolinii|M. wolinii]]'' <small>Miller and Lin 2002</small>
|2={{clade
|1=''[[Methanobrevibacter olleyae|M. olleyae]]'' <small>Rea et al. 2007</small>
|2=''[[Methanobrevibacter ruminantium|M. ruminantium]]'' <small>(Smith and Hungate 1958) Balch and Wolfe 1981</small> (type sp.)
}}
}}
|3={{clade
|1={{clade
|1=''[[Methanobrevibacter woesei|M. woesei]]'' <small>Miller and Lin 2002</small>
|2={{clade
|1=''[[Methanobrevibacter smithii|M. smithii]]'' <small>Balch and Wolfe 1981</small>
|2={{clade
|1=''[[Methanobrevibacter millerae|M. millerae]]'' <small>Rea et al. 2007</small>
|2={{clade
|1=''[[Methanobrevibacter gottschalkii|M. gottschalkii]]'' <small>Miller and Lin 2002</small>
|2=''[[Methanobrevibacter thaueri|M. thaueri]]'' <small>Miller and Lin 2002</small>
}}
}}
}}
}}
|2={{clade
|1=''[[Methanobrevibacter acididurans|M. acididurans]]'' <small>Savant et al. 2002</small>
|2={{clade
|1=''[[Methanobrevibacter arboriphilus|M. arboriphilus]]'' <small>(Zeikus and Henning 1975) Balch and Wolfe 1981</small>
|2={{clade
|1=''[[Methanobrevibacter cuticularis|M. cuticularis]]'' <small>Leadbetter and Breznak 1997</small>
|2={{clade
|1=''[[Methanobrevibacter curvatus|M. curvatus]]'' <small>Leadbetter and Breznak 1997</small>
|2=''[[Methanobrevibacter filiformis|M. filiformis]]'' <small>Leadbetter et al. 1998</small>
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
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}}
}}
}}
}}
|}
Notes:<br>

♠ Strains found at the [[National Center for Biotechnology Information]] (NCBI) but not listed in the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<br>
==See also==
♦ Type strain lost or not available
* [[List of Archaea genera]]
♣ [[International Journal of Systematic Bacteriology]] or [[International Journal of Systematic and Evolutionary Microbiology]] (IJSB/IJSEM) published species that are in press.


==References==
==References==
{{reflist|1}}
{{Reflist|1}}

==Further reading==

===Scientific journals===

* {{ cite journal | author = Judicial Commission of the International Committee on Systematics of Prokaryotes | date = 2005 | title = The nomenclatural types of the orders Acholeplasmatales, Halanaerobiales, Halobacteriales, Methanobacteriales, Methanococcales, Methanomicrobiales, Planctomycetales, Prochlorales, Sulfolobales, Thermococcales, Thermoproteales and Verrucomicrobiales are the genera Acholeplasma, Halanaerobium, Halobacterium, Methanobacterium, Methanococcus, Methanomicrobium, Planctomyces, Prochloron, Sulfolobus, Thermococcus, Thermoproteus and Verrucomicrobium, respectively. Opinion 79 | journal = Int. J. Syst. Evol. Microbiol. | volume = 55 | pages = 517&ndash;518 | pmid = 15653928 | issue = Pt 1 | doi = 10.1099/ijs.0.63548-0}}

* {{ cite journal | author = Euzeby JP |author2=Tindall BJ | date = 2001 | title = Nomenclatural type of orders: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses. Request for an Opinion | journal = Int. J. Syst. Evol. Microbiol. | volume = 51 | pages = 725&ndash;727 | pmid = 11321122 | issue = Pt 2}}

* {{ cite journal | author = Balch WE |author2=Fox GE |author3=Magrum LJ |author4=Woses CR |displayauthors=4 |author5=Wolfe RS | date = 1979 | title = Methanogens: reevaluation of a unique biological group | journal = Microbiol. Rev. | volume = 43 | pages = 260&ndash;296 | pmid = 390357 | issue = 2 | pmc = 281474}}

===Scientific books===

===Scientific databases===

{{Taxonomic references|taxon=Methanobacteriaceae}}


==External links==
==External links==
{{Archaea classification}}

{{Taxonbar|from=Q6823582}}
{{Taxonomic links|microbe=yes|NCBI_taxID=2159|taxoname=Methanobacteriaceae|LSPN_letter=m|LSPN_taxoname=methanobacteriaceae}}
{{Authority control}}


[[Category:Archaea taxonomic families]]
[[Category:Archaea taxonomic families]]

Latest revision as of 13:47, 31 January 2024

Methanobacteriaceae
Scientific classification Edit this classification
Domain: Archaea
Kingdom: Euryarchaeota
Class: Methanobacteria
Order: Methanobacteriales
Family: Methanobacteriaceae
Barker 1956
Genera

Methanobacteriaceae are a family of archaeans in the order Methanobacteriales.[1]

Phylogeny[edit]

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and National Center for Biotechnology Information (NCBI).[1]

16S rRNA based LTP_06_2022[3][4][5] 53 marker proteins based GTDB 08-RS214[6][7][8]
Methanobacteriaceae
Methanothermobacteraceae_A

Methanothermobacter species-group 2

See also[edit]

References[edit]

  1. ^ a b Sayers; et al. "Methanobacteriaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 23 February 2022.
  2. ^ J.P. Euzéby. "Methanobacteriaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 23 February 2022.
  3. ^ "The LTP". Retrieved 10 May 2023.
  4. ^ "LTP_all tree in newick format". Retrieved 10 May 2023.
  5. ^ "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  6. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  7. ^ "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  8. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

External links[edit]

Retrieved from "https://en.wikipedia.org/w/index.php?title=Methanobacteriaceae&oldid=1201376933"