Erysipelotrichia: Difference between revisions

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{{Use dmy dates|date=October 2023}}
{{Taxobox
{{short description|Class of bacteria}}
| color = lightgrey
{{Automatic taxobox
| name = Erysipelotrichia
| image =
| image = Diseases of Swine 31-1.png
| caption =
| image_alt =
| image_caption = Cellular and colonial morphology of ''[[Erysipelothrix rhusiopathiae]]''. Upper row: ×1200, [[crystal violet]]; lower row: ×32
| regnum = [[Bacterium|Bacteria]]
| parent_authority = Ludwig et al. 2010
| phylum = [[Firmicutes]]
| taxon = Erysipelotrichales
| classis = Erysipelotrichia <small>Ludwig et al. 2010</small>
| authority = Ludwig et al. 2010
| ordo = Erysipelotrichales
| subdivision_ranks = Families
<small>Ludwig et al. 2010</small>
| familia = Erysiopelotrichaceae
<small>Verbarg et al. 2004</small>
| subdivision_ranks = Genera
| subdivision =
| subdivision =
* [[Coprobacillaceae]]
* ''[[Allobaculum]]'' <small>Greetham et al. 2006</small>
* [[Erysipelotrichaceae]]
* ''[[Bulleidia]]'' <small>Downes et al. 2000</small>
* [[Turicibacteraceae]]
* ''[[Catenibacterium]]'' <small>Kageyama and Benno 2000</small>
| synonyms =
* ''[[Coprobacillus]]'' <small>Kageyama and Benno 2000</small>
* ''[[Eggerthia]]'' <small>Salvetti et al. 2011</small>
* ''[[Erysipelothrix]]'' <small>Rosenbach 1909</small>
* ''[[Holdemania]]'' <small>Willems et al. 1997</small>
* ''[[Kandleria]]'' <small>Salvetti et al. 2011</small>
* ''[[Solobacterium]]'' <small>Kageyama and Benno 2000</small>
* ''[[Turicibacter]]'' <small>Bosshard et al. 2002</small>
}}
}}


The '''Erysipelotrichia''' are a class of [[bacteria]] of the phylum [[Firmicutes]]. Species of this class are known to be common in the [[gut flora|gut microbiome]], as they have been isolated from swine manure <ref>{{cite journal|last=Han|first=Il |author2=Congeevaram, Shankar |author3=Ki, Dong-Won |author4=Oh, Byoung-Taek |author5=Park, Joonhong|title=Bacterial community analysis of swine manure treated with autothermal thermophilic aerobic digestion|journal=Applied Microbiology and Biotechnology|date=5 October 2010|volume=89|issue=3|pages=835–842|doi=10.1007/s00253-010-2893-8}}</ref> and increase in composition of the mouse gut microbiome for mice switched to diets high in fat.<ref>{{cite journal|last=Greiner|first=Thomas|author2=Bäckhed, Fredrik|title=Effects of the gut microbiota on obesity and glucose homeostasis|journal=Trends in Endocrinology & Metabolism|year=2011|volume=22|issue=4|pages=117–123|doi=10.1016/j.tem.2011.01.002}}</ref>
The '''Erysipelotrichia''' are a class of [[bacterium|bacteria]] of the phylum [[Bacillota]]. Species of this class are known to be common in the [[gut microbiome]], as they have been isolated from swine manure<ref>{{cite journal|last=Han|first=Il |author2=Congeevaram, Shankar |author3=Ki, Dong-Won |author4=Oh, Byoung-Taek |author5=Park, Joonhong|title=Bacterial community analysis of swine manure treated with autothermal thermophilic aerobic digestion|journal=Applied Microbiology and Biotechnology|date=5 October 2010|volume=89|issue=3|pages=835–842|doi=10.1007/s00253-010-2893-8 |pmid=20922382|s2cid=41004718 }}</ref> and increase in composition of the mouse gut microbiome for mice switched to diets high in fat.<ref>{{cite journal|last=Greiner|first=Thomas|author2=Bäckhed, Fredrik|title=Effects of the gut microbiota on obesity and glucose homeostasis|journal=Trends in Endocrinology & Metabolism|year=2011|volume=22|issue=4|pages=117–123|doi=10.1016/j.tem.2011.01.002|pmid=21353592 |s2cid=30862135 }}</ref>


==Phylogeny==
==Phylogeny==
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LSPN) <ref>See the [[List of Prokaryotic names with Standing in Nomenclature]]. Data extracted from {{cite web |author = J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Firmicutes |title=Erysipelotrichi | accessdate=2013-03-20}}</ref>
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref>{{cite web | author=J.P. Euzéby |url=https://lpsn.dsmz.de/class/erysipelotrichia | title=Erysipelotrichia | publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) | access-date=21 October 2016}}</ref> and [[National Center for Biotechnology Information]] (NCBI)<ref>{{cite web |author = Sayers|url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=526524&lvl=9&lin |title=Erysipelotrichia |access-date=20 March 2013 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database |display-authors=etal}}</ref>
<ref>See the [[National Center for Biotechnology Information|NCBI]] [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=526524&lvl=9&lin webpage on Erysipelotrichi] Data extracted from {{cite web |author = Sayers| url=http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi |title=NCBI Taxonomy Browser |publisher=[[National Center for Biotechnology Information]] |accessdate=2013-03-20|display-authors=etal}}</ref>
and the phylogeny is based on 16S rRNA-based LTP release 111 by [['The All-Species Living Tree' Project]] <ref>See the [['The All-Species Living Tree' Project]] [http://www.arb-silva.de/projects/living-tree]. Data extracted from the {{cite web | url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_111/LTPs111_SSU_tree.pdf | title=16S rRNA-based LTP release 111 (full tree) | publisher=[[Silva Comprehensive Ribosomal RNA Database]] | accessdate=2013-03-20}}</ref>


{| class="wikitable"
{{Clade
|-
|label1=[[Aphragmobacteria]]
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_08_2023<ref name=LTP>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=20 November 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format|url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_08_2023.ntree |access-date=20 November 2023}}</ref><ref>{{cite web|title=LTP_08_2023 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_08_2023_release_notes.pdf |access-date=20 November 2023}}</ref>
! colspan=1 | 120 marker proteins based [[Genome Taxonomy Database|GTDB]] 08-RS214<ref name="about">{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="tree">{{cite web |title=bac120_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/bac120_r214.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref>
|-
| style="vertical-align:top|
{{Clade | style=font-size:90%;line-height:80%
|1={{clade
|1={{clade
|1={{clade
|label1=[[Bacilli|Bacilliia]]
|1=''[[Haloplasma contractile]]'' <small>Antunes et al. 2008</small>
|1={{clade
|1=other
|2={{clade
|2={{clade
|1={{clade
|1=''[[Turicibacter sanguinis]]'' <small>Bosshard et al. 2002</small>
|2={{clade
|label1=[[Erysipelotrichaceae 2]]
|1={{clade
|1={{clade
|label1="Lottiidibacillaceae"
|1=''[[Lottiidibacillus]]''
}}
|2={{clade
|1={{clade
|1={{clade
|label1=Culicoidibacteraceae
|1=''[[Clostridium ramosum]]'' <small>(Veillon and Zuber 1898) Holdeman et al. 1971</small>
|2={{clade
|1=''[[Culicoidibacter]]''
|1=''[[Clostridium saccharogumia]]'' <small>Clavel et al. 2007</small>
|2={{clade
|1=''[[Clostridium cocleatum]]'' <small>Kaneuchi et al. 1979</small>
|2=''[[Clostridium spiroforme]]'' <small>Kaneuchi et al. 1979</small>
}}
}}
}}
}}
|2={{clade
|2={{clade
|label1=[[Haloplasmataceae]]
|1=''[[Coprobacillus cateniformis]]'' <small>Kageyama and Benno 2000</small>
|2={{clade
|1=''[[Haloplasma]]''
|1=''[[Catenibacterium mitsuokai]]'' <small>Kageyama and Benno 2000</small>
|label2=[[Turicibacteraceae]] ♦
|2={{clade
|2=''[[Turicibacter]]''
|1=''[[Kandleria vitulina]]'' <small>(Sharpe et al. 1973) Salvetti et al. 2011</small>
|2={{clade
|1=''[[Eggerthia catenaformis]]'' <small>(Eggerth 1935) Salvetti et al. 2011</small>
|2=''[[Sharpea azabuensis]]'' <small>Morita et al. 2008</small>
}}
}}
}}
}}
}}
}}
}}
|2=other
}}
}}
}}
|2={{clade
|label1=[[Fusobacteriota]]
|1={{clade
|label1=[[Fusobacteria|Fusobacteriia]]
|1=[[Fusobacteriales]]
}}
|label2=[[Mycoplasmatota]]
|2={{clade
|1={{clade
|1=''[[Asteroleplasma]]''
|2=[[Coprobacillaceae]] ♦
}}
|2={{clade
|1={{clade
|label1=[[Erysipelotrichales]] ♦
|1=[[Erysipelotrichaceae]]
|label2=[[Acholeplasmatales]]
|2=(incl. [[Anaeroplasmatales]])
}}
|2=[[Mycoplasmatales]] (incl. [[Entomoplasmatales]])
}}
}}
}}
}}
}}
|
{{Clade | style=font-size:90%;line-height:80%
|label1=[[Bacilli|Bacilliia]]
|1={{clade
|1=other
|2={{clade
|1={{clade
|1="Staphylococcales"
|2={{clade
|label1="Erysipelotrichidae"
|1={{clade
|1={{clade
|label1=Culicoidibacterales
|1={{clade
|label1=Culicoidibacteraceae
|1=''[[Culicoidibacter]]''
}}
}}
}}
|2={{clade
|2={{clade
|1=[[Mollicutes]]
|1={{clade
|label2=[[Erysipelotrichaceae 1]]
|label1=[[Haloplasmatales]]
|1={{clade
|label1=[[Turicibacteraceae]]
|1=''[[Turicibacter]]'' ♦
|label2=[[Haloplasmataceae]]
|2=''[[Haloplasma]]''
}}
}}
|2={{clade
|2={{clade
|1={{clade
|1={{clade
|label1=''[[Erysipelotrix]]''
|1={{clade
|1={{clade
|label1="Bathyoplasmales"
|1=?''[[Erysipelothrix muris|E. muris]]'' ♠ <small>Chen et al. 2006</small>
|1={{clade
|2=''[[Erysipelothrix inopinata|E. inopinata]]'' <small>Verbarg et al. 2004</small>
|3={{clade
|label1="Bathyoplasmaceae"
|1=''[[Erysipelothrix rhusiopathiae|E. rhusiopathiae]]'' <small>(Migula 1900) Buchanan 1918</small>
|1="''Ca.'' [[Bathoplasma]]" [MAG-NZ]
|2=''[[Erysipelothrix tonsillarum|E. tonsillarum]]'' <small>Takahashi et al. 1987</small>
}}
}}
}}
}}
|2={{clade
|2={{clade
|1=''[[Holdemania filiformis]]'' <small>Willems et al. 1997</small>
|1="Izemoplasmatales"
|2={{clade
|2=[[Acholeplasmatales]] (incl. [[Anaeroplasmatales]])
|1=''[[Anaerorhabdus furcosa]]'' <small>(Veillon and Zuber 1898) Shah and Collins 1986</small>
|2={{clade
|1=''[[Bulleidia extructa]]'' <small>Downes et al. 2000</small>
|2=''[[Solobacterium moorei]]'' <small>Kageyama and Benno 2000</small>
}}
}}
}}
}}
}}
}}
|2={{clade
|2={{clade
|1={{clade
|1={{clade
|label1="Aphodocolales"
|1=''[[Eubacterium dolichum]]'' <small>Moore et al. 1976</small>
|2={{clade
|1="Aphodocolaceae" [RF39]
|1=''[[Clostridium innocuum]]'' <small>Smith and King 1962</small>
|2=''[[Eubacterium tortuosum]]'' <small>(Debono 1912) Prevot 1938</small>
}}
}}
}}
|2={{clade
|2={{clade
|1={{clade
|1={{clade
|1=RFN20
|1=''[[Eubacterium cylindroides]]'' <small>(Rocchi 1908) Holdeman and Moore 1970</small>
|2=''[[Streptococcus pleomorphus]]'' <small>Barnes et al. 1979</small>
|label2=[[Erysipelotrichales]] ♦
}}
|2={{clade
|2={{clade
|1=[[Coprobacillaceae]]
|1=''[[Eubacterium biforme]]'' <small>(Eggerth 1935) Prevot 1938</small>
|2=[[Erysipelotrichaceae]]
|2=''[[Allobaculum stercoricanis]]'' <small>Greetham et al. 2006</small>
}}
}}
}}
|2=[[Mycoplasmatales]] (incl. [[Entomoplasmatales]])
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
}}
|2=[[Lactobacillales]]
}}
}}
}}
}}
}}
|}
♦ Paraphyletic Erysipelotrichia


==See also==
Notes:<br>
* [[List of bacterial orders]]
♠ Strains found at the [[National Center for Biotechnology Information]] (NCBI) but not listed in the [[List of Prokaryotic names with Standing in Nomenclature]] LPSN
* [[List of bacteria genera]]


==References==
==References==
Line 125: Line 162:
* [http://taxonomicon.taxonomy.nl/TaxonTree.aspx?id=1135096 The Taxonomicon: Class ''Erysipelotrichi'']
* [http://taxonomicon.taxonomy.nl/TaxonTree.aspx?id=1135096 The Taxonomicon: Class ''Erysipelotrichi'']
{{Bacteria classification}}
{{Bacteria classification}}
{{Taxonbar|from=Q5396370}}


[[Category:Firmicutes]]
[[Category:Erysipelotrichia| ]]
[[Category:Erysipelotrichia| ]]
[[Category:Bacteria classes]]

Latest revision as of 13:25, 10 December 2023

Erysipelotrichia
Cellular and colonial morphology of Erysipelothrix rhusiopathiae. Upper row: ×1200, crystal violet; lower row: ×32
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Bacillota
Class: Erysipelotrichia
Ludwig et al. 2010
Order: Erysipelotrichales
Ludwig et al. 2010
Families

The Erysipelotrichia are a class of bacteria of the phylum Bacillota. Species of this class are known to be common in the gut microbiome, as they have been isolated from swine manure[1] and increase in composition of the mouse gut microbiome for mice switched to diets high in fat.[2]

Phylogeny[edit]

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI)[4]

16S rRNA based LTP_08_2023[5][6][7] 120 marker proteins based GTDB 08-RS214[8][9][10]
Bacilliia

other

"Staphylococcales"

"Erysipelotrichidae"
Culicoidibacterales
Culicoidibacteraceae

Culicoidibacter

"Bathyoplasmales"
"Bathyoplasmaceae"

"Ca. Bathoplasma" [MAG-NZ]

"Izemoplasmatales"

Acholeplasmatales (incl. Anaeroplasmatales)

"Aphodocolales"

"Aphodocolaceae" [RF39]

Lactobacillales

♦ Paraphyletic Erysipelotrichia

See also[edit]

References[edit]

  1. ^ Han, Il; Congeevaram, Shankar; Ki, Dong-Won; Oh, Byoung-Taek; Park, Joonhong (5 October 2010). "Bacterial community analysis of swine manure treated with autothermal thermophilic aerobic digestion". Applied Microbiology and Biotechnology. 89 (3): 835–842. doi:10.1007/s00253-010-2893-8. PMID 20922382. S2CID 41004718.
  2. ^ Greiner, Thomas; Bäckhed, Fredrik (2011). "Effects of the gut microbiota on obesity and glucose homeostasis". Trends in Endocrinology & Metabolism. 22 (4): 117–123. doi:10.1016/j.tem.2011.01.002. PMID 21353592. S2CID 30862135.
  3. ^ J.P. Euzéby. "Erysipelotrichia". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 21 October 2016.
  4. ^ Sayers; et al. "Erysipelotrichia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 20 March 2013.
  5. ^ "The LTP". Retrieved 20 November 2023.
  6. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  7. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  8. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  9. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  10. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

External links[edit]

Retrieved from "https://en.wikipedia.org/w/index.php?title=Erysipelotrichia&oldid=1189216973"