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{{Short description|Genus of bacteria}}
{{italic title}}
{{Italic title}}
{{Taxobox
{{Taxobox
| name = ''Desulfovibrio''
| name = ''Desulfovibrio''
| image = Dvulgaris micrograph.JPG
| image =
| image_caption = ''[[Desulfovibrio vulgaris]]''
| image_caption =
| domain = [[Bacteria]]
| domain = [[Bacteria]]
| phylum = [[Proteobacteria]]
| phylum = [[Thermodesulfobacteriota]]
| classis = [[Deltaproteobacteria]]
| classis = [[Desulfovibrionia]]
| ordo = [[Desulfovibrionales]]
| ordo = [[Desulfovibrionales]]
| familia = [[Desulfovibrionaceae]]
| familia = [[Desulfovibrionaceae]]
| genus = '''''Desulfovibrio'''''
| genus = '''''Desulfovibrio'''''
| genus_authority = Kluyver & van Niel 1936
| genus_authority = Kluyver & van Niel 1936
| type_species = ''[[Desulfovibrio desulfuricans]]''
| type_species_authority = (Beijerinck 1895) Kluyver & van Niel 1936
| subdivision_ranks = Species
| subdivision_ranks = Species
| subdivision =
| subdivision =
See text
''[[Desulfovibrio acrylicus|D. acrylicus]]''<br/>
| synonyms =
''[[Desulfovibrio aerotolerans|D. aerotolerans]]''<br/>
* ''Desulfomonas'' <small>Moore, Johnson & Holdeman 1976</small>
''[[Desulfovibrio aespoeensis|D. aespoeensis]]''<br/>
* "''Sporovibrio''" <small>Starkey 1938</small>
''[[Desulfovibrio africanus|D. africanus]]''<br/>
''[[Desulfovibrio alaskensis|D. alaskensis]]''<br/>
''[[Desulfovibrio alcoholivorans|D. alcoholivorans]]''<br/>
''[[Desulfovibrio alkalitolerans|D. alkalitolerans]]''<br/>
''[[Desulfovibrio aminophilus|D. aminophilus]]''<br/>
''[[Desulfovibrio arcticus|D. arcticus]]''<br/>
''[[Desulfovibrio baarsii|D. baarsii]]''<br/>
''[[Desulfovibrio baculatus|D. baculatus]]''<br/>
''[[Desulfovibrio bastinii|D. bastinii]]''<br/>
''[[Desulfovibrio biadhensis|D. biadhensis]]''<ref>{{cite journal|last1=Parte|first1=A.C.|title=Desulfovibrio|journal=www.bacterio.net|url=http://www.bacterio.net/desulfovibrio.html}}</ref><br/>
''[[Desulfovibrio bizertensis|D. bizertensis]]''<br/>
''[[Desulfovibrio burkinensis|D. burkinensis]]''<br/>
''[[Desulfovibrio butyratiphilus|D. butyratiphilus]]''<br/>
''[[Desulfovibrio capillatus|D. capillatus]]''<br/>
''[[Desulfovibrio carbinolicus|D. carbinolicus]]''<br/>
''[[Desulfovibrio carbinoliphilus|D. carbinoliphilus]]''<br/>
''[[Desulfovibrio cuneatus|D. cuneatus]]''<br/>
''[[Desulfovibrio dechloracetivorans|D. dechloracetivorans]]''<br/>
''[[Desulfovibrio desulfuricans|D. desulfuricans]]''<br/>
''[[Desulfovibrio ferrireducens|D. ferrireducens]]''<br/>
''[[Desulfovibrio frigidus|D. frigidus]]''<br/>
''[[Desulfovibrio fructosivorans|D. fructosivorans]]''<br/>
''[[Desulfovibrio furfuralis|D. furfuralis]]''<br/>
''[[Desulfovibrio gabonensis|D. gabonensis]]''<br/>
''[[Desulfovibrio giganteus|D. giganteus]]''<br/>
''[[Desulfovibrio gigas|D. gigas]]''<br>
''[[Desulfovibrio gracilis|D. gracilis]]''<br/>
''[[Desulfovibrio halophilus|D. halophilus]]''<br>
''[[Desulfovibrio hydrothermalis|D. hydrothermalis]]''<br/>
''[[Desulfovibrio idahonensis|D. idahonensis]]''<br/>
''[[Desulfovibrio indonesiensis|D. indonesiensis]]''<br/>
''[[Desulfovibrio inopinatus|D. inopinatus]]''<br/>
''[[Desulfovibrio intestinalis|D. intestinalis]]''<br/>
''[[Desulfovibrio legallii|D. legallii]]''<br/>
''[[Desulfovibrio litoralis|D. alitoralis]]''<br/>
''[[Desulfovibrio longreachensis|D. longreachensis]]''<br/>
''[[Desulfovibrio longus|D. longus]]''<br/>
''[[Desulfovibrio magneticus|D. magneticus]]''<br/>
''[[Desulfovibrio marinus|D. marinus]]''<br/>
''[[Desulfovibrio marinisediminis|D. marinisediminis]]''<br/>
''[[Desulfovibrio marrakechensis|D. marrakechensis]]''<br/>
''[[Desulfovibrio mexicanus|D. mexicanus]]''<br/>
''[[Desulfovibrio multispirans|D. multispirans]]''<br/>
''[[Desulfovibrio oceani|D. oceani]]''<br/>
''[[Desulfovibrio oxamicus|D. oxamicus]]''<br/>
''[[Desulfovibrio oxyclinae|D. oxyclinae]]''<br/>
''[[Desulfovibrio paquesii|D. paquesii]]''<br/>
''[[Desulfovibrio piezophilus|D. piezophilus]]''<br/>
''[[Desulfovibrio pigra|D. pigra]]''<br/>
''[[Desulfovibrio portus|D. portus]]''<br/>
''[[Desulfovibrio profundus|D. profundus]]''<br/>
''[[Desulfovibrio psychrotolerans|D. psychrotolerans]]''<br/>
''[[Desulfovibrio putealis|D. putealis]]''<br/>
''[[Desulfovibrio salixigens|D. salixigens]]''<br/>
''[[Desulfovibrio sapovorans|D. sapovorans]]''<br/>
''[[Desulfovibrio senezii|D. senezii]]''<br/>
''[[Desulfovibrio simplex|D. simplex]]''<br/>
''[[Desulfovibrio sulfodismutans|D. sulfodismutans]]'' <br>
''[[Desulfovibrio termitidis|D. termitidis]]''<br/>
''[[Desulfovibrio thermophilus|D. thermophilus]]''<br/>
''[[Desulfovibrio tunisiensis|D. tunisiensis]]''<br/>
''[[Desulfovibrio vietnamensis|D. vietnamensis]]''<br/>
''[[Desulfovibrio vulgaris|D. vulgaris]]''<br/>
''[[Desulfovibrio zosterae|D. zosterae]]''
}}
}}


'''''Desulfovibrio''''' is a genus of [[Gram-negative]] [[sulfate-reducing bacteria]]. ''Desulfovibrio'' species are commonly found in aquatic environments with high levels of organic material, as well as in water-logged soils, and form major community members of extreme [[Oligotrophic#Oligotrophic environments|oligotrophic habitats]] such as deep granitic fractured rock aquifers.
'''''Desulfovibrio''''' is a genus of [[Gram-negative]] [[sulfate-reducing bacteria]]. ''Desulfovibrio'' species are commonly found in aquatic environments with high levels of organic material, as well as in water-logged soils, and form major community members of extreme [[Oligotrophic#Oligotrophic environments|oligotrophic habitats]] such as deep [[Granitic rock|granitic]] fractured rock aquifers. They're also found in the guts of beetles, such as ''[[Cockchafer|Melolontha melolontha]]'', where they perform sulfate reduction.<ref>{{Cite journal |last=Egert |first=Markus |last2=Stingl |first2=Ulrich |last3=Dyhrberg Bruun |first3=Lars |last4=Pommerenke |first4=Bianca |last5=Brune |first5=Andreas |last6=Friedrich |first6=Michael W. |date=August 2005 |title=Structure and Topology of Microbial Communities in the Major Gut Compartments of Melolontha melolontha Larvae (Coleoptera: Scarabaeidae) |url=https://journals.asm.org/doi/10.1128/AEM.71.8.4556-4566.2005 |journal=Applied and Environmental Microbiology |volume=71 |issue=8 |pages=4556–4566 |doi=10.1128/AEM.71.8.4556-4566.2005 |issn=0099-2240 |pmc=1183286 |pmid=16085849}}</ref>


High amounts of ''Desulfovibrio'' bacteria have been associated with [[inflammatory bowel disease]], [[Bloodstream infections|bacteremia infections]] and [[Parkinson's disease]].<ref>{{cite journal|author=Hong-Xia Fan, Shuo Sheng, Feng Zhang|year=2022|title=New hope for Parkinson's disease treatment: Targeting gut microbiota|journal=[[CNS Neuroscience & Therapeutics]]|volume=28|issue=11|pages=1675–1688|doi=10.1111/cns.13916|pmid=35822696 |pmc=9532916}}</ref><ref>{{cite journal|author=Li, Zhe; Liang, Hongfeng; Hu, Yingyu|year=2023|title=Gut bacterial profiles in Parkinson's disease: A systematic review|journal=CNS Neuroscience & Therapeutics|volume=29|issue=1|pages=140–157|doi=10.1111/cns.13990|pmid=36284437 |pmc=9804059}}</ref>
Like other sulfate-reducing bacteria, ''Desulfovibrio'' was long considered to be [[Obligate anaerobe|obligately anaerobic]]. This is not strictly correct: while growth may be limited, these bacteria can survive in O<sub>2</sub>-rich environments. These types of bacteria are known as [[aerotolerant]].


Some'' Desulfovibrio'' species have in recent years been shown to have [[bioremediation]] potential for toxic [[radionuclides]] such as uranium by a reductive [[bioaccumulation]] process.
Some'' Desulfovibrio'' species have in recent years been shown to have [[bioremediation]] potential for toxic [[radionuclides]] such as [[uranium]] by a [[Reduction (chemistry)|reductive]] [[bioaccumulation]] process, such as converting highly water-soluble [[U(VI)]] to relatively insoluble [[U(IV)]] precipitate, thus removing the toxic uranium from contaminated water.<ref>{{Cite journal |last1=Lovley |first1=Derek R. |last2=Phillips |first2=Elizabeth J. P. |date=November 1992 |title=Bioremediation of uranium contamination with enzymatic uranium reduction |url=https://pubs.acs.org/doi/abs/10.1021/es00035a023 |journal=Environmental Science & Technology |volume=26 |issue=11 |pages=2228–2234 |doi=10.1021/es00035a023 |bibcode=1992EnST...26.2228L |issn=0013-936X}}</ref>

==Phylogeny==
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref name=LPSN>{{cite web | author=J.P. Euzéby | url=https://lpsn.dsmz.de/genus/Desulfovibrio | title=Desulfovibrio | access-date=2022-09-09 | publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)}}</ref> and [[National Center for Biotechnology Information]] (NCBI)<ref name=NCBI>{{cite web |author = Sayers| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=872&lvl=3&keep=1&srchmode=1&unlock |title=Desulfovibrio |access-date=2022-09-09 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database |display-authors=et al.}}</ref>

{| class="wikitable"
|-
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_08_2023<ref name=LTP>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=20 November 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format|url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_08_2023.ntree |access-date=20 November 2023}}</ref><ref>{{cite web|title=LTP_08_2023 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_08_2023_release_notes.pdf |access-date=20 November 2023}}</ref>
! colspan=1 | 120 marker proteins based [[Genome Taxonomy Database|GTDB]] 08-RS214<ref name="about">{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="tree">{{cite web |title=bac120_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/bac120_r214.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2023}}</ref>
|-
| style="vertical-align:top|
{{Clade | style=font-size:90%;line-height:80%
|label1=''Desulfovibrio''
|1={{clade
|1=''D. piger''
|2={{clade
|1={{clade
|1=''D. legallii''
|2=''D. porci''
}}
|2={{clade
|1=''[[Desulfovibrio desulfuricans|D. desulfuricans]]''
|2={{clade
|1=''D. intestinalis''
|2=''D. simplex'' <small>Zellner et al. 1990</small>
}}
}}
}}
}}
}}
|
{{Clade | style=font-size:90%;line-height:90%
|label1=''Desulfovibrio''
|1={{clade
|1={{clade
|1="''Ca.'' D. faecigallinarum" <small>Gilroy et al. 2021</small>
|2="''Ca.'' D. intestinipullorum" <small>Gilroy et al. 2021</small>
}}
|2={{clade
|1={{clade
|1="''Ca.'' D. intestinigallinarum" <small>Gilroy et al. 2021</small>
|2={{clade
|1=''D. piger'' <small>(Moore et al. 1976) Loubinoux et al. 2002</small>
|2={{clade
|1="''Ca.'' D. gallistercoris" <small>Gilroy et al. 2021</small>
|2="''Ca.'' D. intestinavium" <small>Gilroy et al. 2021</small>
}}
}}
}}
|2={{clade
|1={{clade
|1={{clade
|1="''D. fairfieldensis''" <small>McDougall et al. 1997</small>
|2=''D. porci'' <small>Wylensek et al. 2021</small>
}}
|2={{clade
|1="''Ca.'' D. kirbyi" <small>Takeuchi et al. 2020</small>
|2="''Ca.'' D. trichonymphae" <small>Sato et al. 2009</small>
}}
}}
|2={{clade
|1=''D. legallii'' <small>corrig. Thabet et al. 2013</small>
|2={{clade
|1=''[[Desulfovibrio desulfuricans|D. desulfuricans]]'' <small>(Beijerinck 1895) Kluyver & van Niel 1936</small>
|2=''D. intestinalis'' <small>Frohlich et al. 1999</small>
}}
}}
}}
}}
}}
}}
|}
Unassigned species:
* ''[[Desulfovibrio biadhensis|D. biadhensis]]'' {{small|Fadhlaoui et al. 2015}}
* ''D. caledoniensis'' <small>Tardy-Jacquenod et al. 1996</small>
* ''D. cavernae'' <small>Sass & Cypionka 2004</small>
* ''D. diazotrophica'' <small>Sayavedra et al. 2021</small>
* ''D. halohydrocarbonoclasticus'' <small>Zobell 1947</small>
* ''D. hontreensis'' <small>Tarasov et al. 2015</small>
* ''D. mangrovi'' <small>Zhou, Zhang & Li 2023</small>
* ''D. multispirans'' <small>Czechowski et al. 1984</small>
* ''D. oliviopondense'' <small>Qatabi Sr. 2007</small>
* ''D. oryzae'' <small>Ouattara et al. 2000b</small>
* ''D. rubentschikii'' <small>(Baars 1930) ZoBell 1948</small>
* ''D. singaporenus'' <small>Sheng et al. 2007</small>

==See also==
* [[List of bacterial orders]]
* [[List of bacteria genera]]


==References==
==References==
Line 93: Line 121:


==External links==
==External links==
*{{cite journal|last1=Amrani|first1=Amira|last2=Bergon|first2=Aurelie|last3=Holota|first3=Helene|last4=Tamburini|first4=Christian|last5=Garel|first5=Marc|last6=Ollivier|first6=Bernard|last7=Imbert|first7=Jean|last8=Dolla|first8=Alain|title=Transcriptomics Reveal Several Gene Expression Patterns in the Piezophile Desulfovibrio hydrothermalis in Response to Hydrostatic Pressure|journal=PLOS One|date=12 September 2014|volume=9|issue=9|page=e106831|doi=10.1371/journal.pone.0106831}}
*{{cite journal|last1=Amrani|first1=Amira|last2=Bergon|first2=Aurelie|last3=Holota|first3=Helene|last4=Tamburini|first4=Christian|last5=Garel|first5=Marc|last6=Ollivier|first6=Bernard|last7=Imbert|first7=Jean|last8=Dolla|first8=Alain|title=Transcriptomics Reveal Several Gene Expression Patterns in the Piezophile Desulfovibrio hydrothermalis in Response to Hydrostatic Pressure|journal=PLOS ONE|date=12 September 2014|volume=9|issue=9|page=e106831|doi=10.1371/journal.pone.0106831|pmid=25215865|pmc=4162548|bibcode=2014PLoSO...9j6831A|doi-access=free}}
* {{cite book | last1=Czechowski | first1=Melvin | last2=Rossmore | first2=H.W. | year=1981 | title=Developments in Industrial Microbiology | url=http://www.biosan.com/pubs/EffectSelected.pdf | accessdate=2010-10-20 }}
* {{cite book | last1=Czechowski | first1=Melvin | last2=Rossmore | first2=H.W. | year=1981 | title=Developments in Industrial Microbiology | url=http://www.biosan.com/pubs/EffectSelected.pdf | access-date=2010-10-20 | archive-url=https://web.archive.org/web/20100103190624/http://biosan.com/pubs/EffectSelected.pdf | archive-date=2010-01-03 | url-status=dead }}


{{Bacteria classification|state=collapsed}}
{{Taxonbar|from=Q15846377}}}
{{Taxonbar|from=Q15846377}}
{{Authority control}}


[[Category:Deltaproteobacteria]]
[[Category:Desulfovibrio|*]]
[[Category:Bacteria genera]]
[[Category:Bacteria genera]]




{{deltaproteobacteria-stub}}
{{Bacteria-stub}}

Latest revision as of 18:43, 29 April 2024

Desulfovibrio
Scientific classification
Domain:
Bacteria
Phylum:
Thermodesulfobacteriota
Class:
Desulfovibrionia
Order:
Desulfovibrionales
Family:
Desulfovibrionaceae
Genus:
Desulfovibrio

Kluyver & van Niel 1936
Type species
Desulfovibrio desulfuricans
(Beijerinck 1895) Kluyver & van Niel 1936
Species

See text

Synonyms
  • Desulfomonas Moore, Johnson & Holdeman 1976
  • "Sporovibrio" Starkey 1938

Desulfovibrio is a genus of Gram-negative sulfate-reducing bacteria. Desulfovibrio species are commonly found in aquatic environments with high levels of organic material, as well as in water-logged soils, and form major community members of extreme oligotrophic habitats such as deep granitic fractured rock aquifers. They're also found in the guts of beetles, such as Melolontha melolontha, where they perform sulfate reduction.[1]

High amounts of Desulfovibrio bacteria have been associated with inflammatory bowel disease, bacteremia infections and Parkinson's disease.[2][3]

Some Desulfovibrio species have in recent years been shown to have bioremediation potential for toxic radionuclides such as uranium by a reductive bioaccumulation process, such as converting highly water-soluble U(VI) to relatively insoluble U(IV) precipitate, thus removing the toxic uranium from contaminated water.[4]

Phylogeny[edit]

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[5] and National Center for Biotechnology Information (NCBI)[6]

16S rRNA based LTP_08_2023[7][8][9] 120 marker proteins based GTDB 08-RS214[10][11][12]
Desulfovibrio

D. piger

D. legallii

D. porci

D. desulfuricans

D. intestinalis

D. simplex Zellner et al. 1990

Desulfovibrio

"Ca. D. faecigallinarum" Gilroy et al. 2021

"Ca. D. intestinipullorum" Gilroy et al. 2021

"Ca. D. intestinigallinarum" Gilroy et al. 2021

D. piger (Moore et al. 1976) Loubinoux et al. 2002

"Ca. D. gallistercoris" Gilroy et al. 2021

"Ca. D. intestinavium" Gilroy et al. 2021

"D. fairfieldensis" McDougall et al. 1997

D. porci Wylensek et al. 2021

"Ca. D. kirbyi" Takeuchi et al. 2020

"Ca. D. trichonymphae" Sato et al. 2009

D. legallii corrig. Thabet et al. 2013

D. desulfuricans (Beijerinck 1895) Kluyver & van Niel 1936

D. intestinalis Frohlich et al. 1999

Unassigned species:

  • D. biadhensis Fadhlaoui et al. 2015
  • D. caledoniensis Tardy-Jacquenod et al. 1996
  • D. cavernae Sass & Cypionka 2004
  • D. diazotrophica Sayavedra et al. 2021
  • D. halohydrocarbonoclasticus Zobell 1947
  • D. hontreensis Tarasov et al. 2015
  • D. mangrovi Zhou, Zhang & Li 2023
  • D. multispirans Czechowski et al. 1984
  • D. oliviopondense Qatabi Sr. 2007
  • D. oryzae Ouattara et al. 2000b
  • D. rubentschikii (Baars 1930) ZoBell 1948
  • D. singaporenus Sheng et al. 2007

See also[edit]

References[edit]

  1. ^ Egert, Markus; Stingl, Ulrich; Dyhrberg Bruun, Lars; Pommerenke, Bianca; Brune, Andreas; Friedrich, Michael W. (August 2005). "Structure and Topology of Microbial Communities in the Major Gut Compartments of Melolontha melolontha Larvae (Coleoptera: Scarabaeidae)". Applied and Environmental Microbiology. 71 (8): 4556–4566. doi:10.1128/AEM.71.8.4556-4566.2005. ISSN 0099-2240. PMC 1183286. PMID 16085849.
  2. ^ Hong-Xia Fan, Shuo Sheng, Feng Zhang (2022). "New hope for Parkinson's disease treatment: Targeting gut microbiota". CNS Neuroscience & Therapeutics. 28 (11): 1675–1688. doi:10.1111/cns.13916. PMC 9532916. PMID 35822696.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  3. ^ Li, Zhe; Liang, Hongfeng; Hu, Yingyu (2023). "Gut bacterial profiles in Parkinson's disease: A systematic review". CNS Neuroscience & Therapeutics. 29 (1): 140–157. doi:10.1111/cns.13990. PMC 9804059. PMID 36284437.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  4. ^ Lovley, Derek R.; Phillips, Elizabeth J. P. (November 1992). "Bioremediation of uranium contamination with enzymatic uranium reduction". Environmental Science & Technology. 26 (11): 2228–2234. Bibcode:1992EnST...26.2228L. doi:10.1021/es00035a023. ISSN 0013-936X.
  5. ^ J.P. Euzéby. "Desulfovibrio". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
  6. ^ Sayers; et al. "Desulfovibrio". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
  7. ^ "The LTP". Retrieved 20 November 2023.
  8. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  9. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  10. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  11. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  12. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
  • Madigan M; Martinko J, eds. (2005). Brock Biology of Microorganisms (11th ed.). Prentice Hall. ISBN 0-13-144329-1.

External links[edit]


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