Biochemistry database
A biochemistry database is a database for topics related to biochemistry . Computer-aided databases of biochemistry are counted as bioinformatics .
Protein databases
- Uniprot
- ExPASy
- BRENDA
- Enzyme Council
- Pfam
- Reactome
- PROSITE
- MEROPS
- MIPModDB
- Mitocheck
- Mascot
- MimoDB
- IEDB
- SYFPEITHI
- VIOLIN
- SABIO-Reaction Kinetics Database
- STRING
- TRANSFAC
- NucleaRDB
- Transporter Classification Database
Nucleic acid databases
- International nucleotide sequence database collaboration
- GenBank
- Entrez genes
- Kyoto Encyclopedia of Genes and Genomes
- European Nucleotide Archive
- OMIM
- GeneCards
- Synthetic Gene Database
- Nucleic Acid Database
Carbohydrate Databases
Databases of small molecules
Gene expression databases
Molecular Structure Databases
Cell type databases
literature
- M. Kim, KH Lee, SW Yoon, BS Kim, J. Chun, H. Yi: Analytical tools and databases for metagenomics in the next-generation sequencing era. In: Genomics & informatics. Volume 11, number 3, September 2013, pp. 102-113, doi : 10.5808 / GI.2013.11.3.102 , PMID 24124405 , PMC 3794082 (free full text).
- JP Plazzer, F. Macrae: DNA variant databases: current state and future directions. In: Methods in molecular biology. Volume 1168, 2014, pp. 263-273, doi : 10.1007 / 978-1-4939-0847-9_15 , PMID 24870141 .
- MP Hoeppner, LE Barquist, PP Gardner: An introduction to RNA databases. In: Methods in molecular biology. Volume 1097, 2014, pp. 107-123, doi : 10.1007 / 978-1-62703-709-9_6 , PMID 24639157 .
- D. Baycin Hizal, D. Wolozny, J. Colao, E. Jacobson, Y. Tian, SS Krag, MJ Betenbaugh, H. Zhang: Glycoproteomic and glycomic databases. In: Clinical proteomics. Volume 11, number 1, 2014, p. 15, doi : 10.1186 / 1559-0275-11-15 , PMID 24725457 , PMC 3996109 (free full text).
- S. Chowdhury, RR Sarkar: Comparison of human cell signaling pathway databases-evolution, drawbacks and challenges. In: Database: the journal of biological databases and curation. Volume 2015, 2015, S., doi : 10.1093 / database / bau126 , PMID 25632107 .
- A. Smalter Hall, Y. Shan, G. Lushington, M. Visvanathan: An overview of computational life science databases & exchange formats of relevance to chemical biology research. In: Combinatorial chemistry & high throughput screening. Volume 16, Number 3, March 2013, pp. 189-198, PMID 22934944 .
- L. Stein: Creating databases for biological information: an introduction. In: Current protocols in bioinformatics. Chapter 9, June 2013, S. Unit9.1, doi : 10.1002 / 0471250953.bi0901s42 , PMID 23749755 .