Pleolipoviridae

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Pleolipoviridae
Systematics
Classification : Viruses
Area : Monodnaviria
Empire : Trapavirae
Phylum : Saleviricota
Class : Huolimaviricetes
Order : Haloruvirales
Family : Pleolipoviridae
Taxonomic characteristics
Genome : ssDNA / dsDNA linear / circular
Baltimore : Groups 1, 2
Cover : available
Scientific name
Pleolipoviridae
Left

The Pleolipoviridae ( pleolipoviruses ) are a family of pseudo-spherical and pleomorphic DNA viruses, the genome of which is partly double-stranded and partly single-stranded: there are circular ssDNA, circular dsDNA or linear dsDNA. According to the Baltimore classification, the Pleolipoviridae cannot therefore be assigned unambiguously to one of the two groups 1 or 2 in their entirety; this also applies in part to individual species themselves. The diameter of the virus particles (virions) is typically 40 to 70 nm a membrane vesicle which encloses various types of DNA genomes with a length of 7 to typically 10, a maximum of 16  kb ( kilonucleotides ). The genome encodes 8 to 16 open reading frames (ORFs). The Pleolipoviridae each have a narrowly defined host range; their natural hosts are salt-loving (halophilic) archaea of the genera Halorubrum , Haloarcula and Halogeometricum in the class Halobacteria (Haloarchaeen), Phylum (division) Euryarchaeota .

etymology

The name Pleo-lipo comes from the Greek πλειο-λιπος (much-bold) and refers to the pleomorphic virion and the presence of an envelope.

Propagation cycle

Little is known about the reproduction cycle of the Pleolipoviridae so far. It is non- lytic . Typically, the virions contain a single type of spike protein on the envelope and a single type of internal membrane protein (embedded in the envelope). After the virion attaches to the host cell, the DNA genome invades the host's cytoplasm. It is assumed that the ssDNA is then first converted into dsDNA. Viral mRNA and ribosomes from the host are used for translation . Presumably the dsDNA genome is transcribed by the host's RNA polymerase . The genome replication possibly happens in the 'rolling circle', i.e. all around in a circle. Finally, the daughter virions are composed and released.

Systematics

Three genera are officially recognized by the International Committee on Taxonomy of Viruses (ICTV) (as of November 2018): Alpha , Beta and Gammapleolipovirus , which result from the division of the only earlier genus, pleolipovirus .

  • Family Pleolipoviridae
  • Species Haloarcula virus HHPV1 (alias Haloarcula hispanica pleomorphic virus 1 , HHPV1) (dsDNA, ssDNA)
  • Species Haloarcula virus HHPV2 (dsDNA, ssDNA)
  • Species Halorubrum virus HRPV1 (alias Halorubrum pleomorphic virus 1 , HRPV1, Typus) (dsDNA, ssDNA)
  • Species Halorubrum virus HRPV2 (dsDNA, ssDNA)
  • Species Halorubrum virus HRPV6 (dsDNA, ssDNA)
  • Species Halogeometricum virus HGPV1 (alias Halogeometricum pleomorphic virus 1 , HGPV1) (dsDNA)
  • Species Halorubrum virus HRPV3 (alias Halorubrum pleomorphic virus 3 , HRPV3, Typus) (dsDNA)

Kim et al. (2019) suggested the following cladogram (simplified):





Podoviridae : Picovirinae


   

Tectiviridae (monoderm hosts: Gram-positive bacteria)



   

Tectiviridae (diderm hosts: Gram-negative bacteria)


   

" Autolykiviridae "




   

Ampullaviridae


   

Thaspiviridae : Nitmarvirus ( Nitrosopumilus spindle-shaped virus 1) as well as "2" and "3"


   

Halspiviridae : Salterprovirus ( His 1 virus )


   

Pleolipoviridae : Gammapleolipovirus ( His 2 virus )






Template: Klade / Maintenance / Style

Individual evidence

  1. a b c d e ICTV: ICTV Taxonomy history: Haloarcula virus HHPV1 , EC 51, Berlin, Germany, July 2019; Email ratification March 2020 (MSL # 35)
  2. a b c d e Pleolipoviridae , on: Viral Zone
  3. a b ICTV Master Species List 2018a v1 , ICTV MSL including all taxa updates since the 2017 release (MSL # 33)
  4. a b Pleolipoviridae , on: ICTV online
  5. ssDNA Rolling circle , on: Viral Zone
  6. Jong-Geol Kim, So-Jeong Kim, Virginija Cvirkaite-Krupovic, Mart Krupovic, Jang-Cheon Cho, Sung-Keun Rhee et al. : Spindle-shaped viruses infect marine ammoniaoxidizing thaumarchaea , in: PNAS 116. 201905682, 2019, doi: 10.1073 / pnas.1905682116
  7. Scientists Find New Type of Virus in World's Oceans: Autolykiviridae , on: sci-news of January 25, 2018
  8. Researchers discover a mysterious virus that dominates the oceans on: business insider January 29, 2018
  9. Never-Before-Seen Viruses With Weird DNA Were Just Discovered in The Ocean , on: science alert of January 25, 2018
  10. NCBI: Autolykiviridae (family) - unclassified dsDNA viruses
  11. SIB: Ampullaviridae , on: ViralZone
  12. ICTV: ICTV Taxonomy history: Nitmarvirus NSV1 , EC 51, Berlin, Germany, July 2019; Email ratification March 2020 (MSL # 35)
  13. SIB: 190 (Salterprovirus) , on: ViralZone