Geobacter metallireducens

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Geobacter metallireducens
Systematics
Department : Proteobacteria
Class : Deltaproteobacteria
Order : Desulfuromonadales
Family : Geobacteraceae
Genre : Geobacter
Type : Geobacter metallireducens
Scientific name
Geobacter metallireducens
Lovley et al. 1995

Geobacter metallireducens is a type of prokaryotic microorganism . G. metallireducens is anaerobic and belongs to the Bacteria domain . It is the type species of their genus Geobacter .

description

The first isolation of the later species Geobacter metallireducens took place in 1987 by Derek Lovley from sediments of the Potomac River . The species was described in 1993 and confirmed in 1995.

The name "Geobacter metallireducens" roughly means that the organism is rod-shaped (bacter), occurs underground (Geo) and can reduce metals (metallireducens). During the isolation of the first culture strain, GS-15, it became apparent that these bacteria are not magnetotactic and can reduce amorphous iron oxide to extracellular, fine-grained magnetite under anaerobic conditions .

The cells are Gram-negative , strictly anaerobic rods that oxidize various short-chain fatty acids , alcohols and monoaromatic compounds with trivalent iron as the sole electron acceptor . In addition, acetate is also oxidized with the help of the reduction of other metals, namely tetravalent manganese and tetravalent uranium , as well as with the help of nitrate .

The cytochromes of type c could be oxidized by gold , silver , mercury and chromate . The menaquinone concentration is comparable to that of the Gram-negative sulfate reducer . The fatty acids , which on phospholipid - esters were linked, reported (anaerobic on the activity of enzymes desaturase ) and the function of pathways of fatty acid biosynthesis out.

Electron Transfer and Syntrophies

Schematic representation of the stoichiometric ratios in the conversion of ethanol (C 2 H 6 O) to methane (CH 4 ) and carbon dioxide (CO 2 ) by Geobacter metallireducens and Methanosarcina barkeri . The horizontal arrows (→ and ←) show the direction of chemical reactions. The simple vertical arrows (↑ and ↓) represent diffusion (to the location of lower concentration) and the green double arrow ( ↑↑ ) is the direct electron transfer between the species (DIET, direct interspecies electron transfer ).

G. metallireducens has the distinctive property of being able to transfer electrons extracellularly (i.e. outside the cell ). On the one hand, this probably serves primarily to reduce solids that cannot be absorbed into the cell (e.g. amorphous iron oxide), on the other hand, it enables a mechanism of syntrophy , the direct electron transfer between species (DIET), which occurs first for G. metallireducens and G. sulfurreducens .

The microbial nanowires that were discovered in the species G. sulfurreducens , which is closely related to G. metallireducens, play an important role . The pair mentioned was investigated with regard to the direct electron transfer between the species and it was found that the partner that acts as an electron donor ( G. metallireducens ) needs the microbial nanowires, whereas on the side of the electron acceptor partner ( G. sulfurreducens ) they do not must be present.

A well-studied relationship is that between the bacterium Geobacter metallireducens and the methane-forming archaeon Methanosarcina barkeri . One partner ( G. metallireducens ) can oxidize ethanol and uses M. barkeri as an electron acceptor partner. The partner “ reduced ” by the oxidation ( M. barkeri ) in turn uses the electrons from the electron donor partner G. metallireducens and the other products of the previous oxidation ( acetic acid and protons ) to generate carbon dioxide and methane .

The same applies to Methanosaeta harundinacea , which is also a methane-forming archaeon; Here, too, the formation of methane from ethanol through the interaction of G. metallireducens and M. harundinacea was described by DIET.

Another possibility to use the extracellular electron transfer of G. metallireducens consists in the addition of substances which facilitate such a transfer; This applies for example to the humic substances similar anthraquinone-2,6-disulfonate (AHQDS, reduced form) or anthraquinone -2,6- disulfonate to (AQDS, oxidized form), since this redox system easily from the reduced in converts the oxidized form and vice versa. An investigation of the syntrophy effects between G. metallireducens and Wolinella succinogenes showed that the redox couple (AQDS / AHQDS) mediates the electron transfer between the species. In a study on the biological production of hydrogen from xylose (wood sugar), the clostridial species Clostridium beijerinckii was used. In a co-culture of C. beijerinckii and G. metallireducens to which the reduced form AHQDS was added, the hydrogen production and the use of xylose could be increased compared to the pure culture of C. beijerinckii without AHQDS. The improvement was mainly attributed to the fact that G. metallireducens lowered the acetic acid concentration and it was assumed that G. metallireducens regenerated the reduced form of the AQDS / AHQDS redox system.

Systematics

Geobacter metallireducens was discovered in 1993 by Loley et al. and confirmed in 1995 by the International Association of Microbiological Societies ( IUMS ).

The type strain of G. metallireducens is GS-15 and has been deposited in appropriate collections (ATCC 53774 and DSM 7210).

The 16S rRNA - sequence pointed Geobacter as a member of Deltaproteobacteria out; Geobacter is the type genus of the Geobacteraceae family .

The current classification and nomenclature can be found in the LPSN (accessed 2019-05).

Ecology and applications

Geobacter metallireducens is an anaerobic iron reducer that prefers underground, freshwater-rich habitats . Its ability to transfer electrons outside of its own cells makes it possible for G. metallireducens to expand its metabolic spectrum (or that of its partners) through syntrophies . Not least because of the syntrophies, G. metallireducens is likely to have some importance in various material cycles (e.g. in the carbon , nitrogen , iron and sulfur cycle ).

G. metallireducens can develop flagella and pili , but only makes this effort under certain conditions and this has been observed when no soluble but insoluble trivalent iron or tetravalent manganese was available as a terminal electron acceptor. Through chemotaxis with the help of the flagella and exoelectrogenic electron transfer with the help of the pili, G. metallireducens can possibly make better use of the insoluble metals than other metal-reducing microbes; this would explain the dominance of G. metallireducens in some sediments .

In terms of applications, G. metallireducens is interesting because it can break down or convert pollutants ; this includes

While organic pollutants are intended to be broken down, metals (which are mostly heavy metals ) are primarily about extraction from the environment or from wastewater . In most cases, the focus is on cleaning (e.g. technical waste water), but in the case of valuable metals (e.g. platinum), recovery is also of interest.

Another line of thought would be to use G. metallireducens ' property of producing magnetite for superparamagnetic materials; the material properties strongly depend on the culture conditions.

It makes sense to examine G. metallireducens for its usefulness in microbial fuel cells . In an investigation into energy generation from wastewater, the closely related species Geobacter sulfurreducens showed more favorable properties than G. metallireducens , which could be due to the different adhesion to the anode . Elsewhere it was reported that tannery wastewater containing toxic chromium (hexavalent) and other added organic waste were used to generate electricity in microbial fuel cells, with the anode containing G. metallireducens and converting the chromium to a less toxic (trivalent) form. was reduced.

Could continue to G. metallireducens the nitrate cleardown help as it is a denitrifying is. There are also experiments with microbial fuel cells for this purpose . G. metallireducens may also have a reverse path tread, that nitrogen from the air lock when not bound nitrogen is present.

Since G. metallireducens can support the two methane-forming archaea Methanosarcina barkeri and Methanosaeta harundinacea through electron transfer (DIET) on a laboratory scale and such electron transfer is also possible on conductive materials, it makes sense to carry out experiments with conductive materials to test the production of methane . Since in many experiments to promote methane formation by conductive materials there can be several causes for the observed effects and since methanogenesis is not necessarily linked to DIET, the results must be examined from several sides in order to interpret them. So far (2019-05) the relationships between G. metallireducens and M. barkeri and between G. metallireducens and M. harundinacea are the only two pairs in which DIET between bacteria and methane-forming archaea has been unequivocally proven.

Databases

Remarks

  1. a b Extracellular conversion of amorphous iron oxide to magnetite by microbes: The amorphous iron oxide is an insoluble, chemical compound that has a low degree of crystallization and is extracellular, i.e. outside the cells of microorganisms . The reduction of Fe (III) to Fe (II), i.e. the transfer of electrons to trivalent iron , produces magnetite , an iron oxide made from bivalent and trivalent iron with a crystalline structure.
  2. a b c DIET, direct interspecies electron transfer . Immediate electron transfer between species. Use of the abbreviation or the term: Wang et al. 2016, PMID 26973614 .
  3. type strain GS-15 from Geobacter metallireducens as "ATCC 53774" in the ATCC®: Geobacter metallireducens Lovley et al. (ATCC® 53774 ™). ATCC, accessed May 18, 2019 .
  4. Type strain GS-15 from Geobacter metallireducens as "DSM 7210" ​​in the DSMZ : DSM No .: 7210, Type strain. Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures GmbH, accessed on May 18, 2019 (English).
  5. Iron reducer: microorganism that reduces iron , generally trivalent iron to divalent iron. See also Iron # External Electron Donor and Acceptor .
  6. Exoelektrogen: A "Exoelektrogener" is a microorganism , the electron transfer to outside the cell or from outside the cell in a position. See also Microbial Fuel Cell # structure , en: Exoelectrogenic .
  7. Pili: In Geobacter species, pili serve as microbial nanowires. See microbial nanowires .

Individual evidence

  1. a b IUMS : Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 54. In: International Journal of Systematic Bacteriology. 45, 1995, p. 619, doi: 10.1099 / 00207713-45-3-619 .
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  3. a b c d e f Derek R. Lovley, John F. Stolz, Gordon L. Nord, Elizabeth JP Phillips: Anaerobic production of magnetite by a dissimilatory iron-reducing microorganism. In: Nature. 330, 1987, p. 252, doi: 10.1038 / 330252a0 .
  4. a b c d e f g h D. R. Lovley, SJ Giovannoni, DC White, JE Champine, EJ Phillips, YA Gorby, S. Goodwin: Geobacter metallireducens gen. Nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals. In: Archives of microbiology. Vol. 159, Number 4, 1993, pp. 336-344, PMID 8387263 .
  5. a b IUMS : Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 54. In: International Journal of Systematic Bacteriology. 45, 1995, p. 619, doi: 10.1099 / 00207713-45-3-619 .
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