Geobacter

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Geobacter
Geobacter sulfurreducens

Geobacter sulfurreducens

Systematics
Domain : Bacteria (bacteria)
Department : Proteobacteria
Class : Deltaproteobacteria
Order : Desulfuromonadales
Family : Geobacteraceae
Genre : Geobacter
Scientific name
Geobacter
Lovley et al. 1995

Geobacter is a genus of prokaryotic microorganisms . Geobacter is anaerobic and belongs to the domain of the living organism Bacteria .

description

The first isolation of a strain of the later genus Geobacter took place in 1987 by Derek Lovley from sediments of the Potomac River . The genus and its type species ( G. metallireducens ) were described in 1993 and confirmed in 1995. The name "Geobacter" roughly means that the organism is rod-shaped (bacter) and occurs underground (Geo).

The first culture strain , GS-15, can reduce amorphous iron oxide under anaerobic conditions to extracellular, fine-grained magnetite , although the bacteria are not magnetotactic . The ability to reduce metals led to the epithet "metallireducens" for the type species G. metallireducens .

Another important Geobacter species is G. sulfurreducens . The species was from surface sediments a trench in Norman ( Oklahoma ) isolated that with hydrocarbons was contaminated and described 1994th

The first two species, G. metallireducens and G. sulfurreducens, have been classified as closely related and are often compared with one another. They are anaerobic, dissimilatory iron reducers that can use acetate as an electron donor and trivalent iron [Fe (III)] as an electron acceptor for their energy metabolism . Instead of trivalent iron, trivalent cobalt [Co (III)] of both types can also be used for the oxidation of the acetate.

However, there are also a number of differences between the two species, mainly the type strains ( G. metallireducens GS-15 and G. sulfurreducens PCA) were compared:

G. sulfurreducens can use hydrogen as electron donor in combination with Fe (III) as electron acceptor, while G. metallireducens cannot. At the time of the description (1994) no other organism besides G. sulfurreducens was known that could couple the Fe (III) reduction to both the oxidation of hydrogen and the oxidation of acetate. Another difference is the reduction of sulfur , which G. metallireducens cannot and G. sulfurreducens can do with hydrogen as an electron donor (hence the epithet “sulfurreducens”, which means sulfur-reducing). G. metallireducens can use tetravalent manganese [Mn (IV)] as the terminal electron acceptor and G. sulfurreducens cannot. G. metallireducens can breathe with nitrate and G. sulfurreducens cannot. Furthermore, G. metallireducens can oxidize various alcohols and aromatic compounds, which G. sulfurreducens cannot. G. metallireducens could only grow in a medium that corresponds to fresh water , while G. sulfurreducens operated iron breathing in a medium in which the salinity corresponded to half that of seawater .

Both species were sequenced , first the genome of G. sulfurreducens (description 2003) and then the genome of G. metallireducens (description 2009); the ring-shaped bacterial chromosome of G. sulfurreducens comprised 3,814,128 bp (type strain PCA), that of G. metallireducens of 3,997,420 bp (type strain GS-15). G. metallireducens also had a plasmid (pMET1, 13,762 bp). A comparison of known sequences and properties indicated that G. metallireducens could differ dramatically from other Geobacteraceae in terms of its metabolism , physiology and gene regulation .

Characteristics of the genus

If, in addition to information about the two best-known species ( G. metallireducens and G. sulfurreducens ) , one consults a few other species descriptions ( G. anodireducens, G. bemidjiensis, G. bremensis , G. chapellei , G. grbiciae , G. hydrogenophilus , G. . lovleyi, G. pelophilus , G. psychrophilus , G. toluenoxydans , G. uraniireducens ), the following picture emerges:

  • Geobacter is a genus of gram-negative , chemoorganothropic anaerobes whose cells are rod-shaped and which do not form spores .
  • The cells are often immobile, but in some species they can also develop flagella and then be mobile. The size of the cells is often in the range of 1 to 3 micrometers ( µm ) in length and 0.5 to 0.6 µm in diameter. There are shorter (0.8 µm), longer (4 µm), thinner (0.3 µm) and thicker (0.8 µm) cells in this genus. They are often straight rods, with some species slightly curved to curved rods.
  • Special features of the cell morphology occur insofar as pili are sometimes formed in addition to flagella and that vesicles can be present. Some types have a tendency to clump the cells.
  • The optimal growth temperatures are usually in the range of 30 to 35 ° C , but can also be lower (up to 17 ° C). The preferred pH values are usually slightly acidic to neutral. The salt content in the medium, which is favorable for growth , often corresponds to that of fresh water ; Metabolism can also be possible at a higher concentration (which corresponds to half that of seawater ).
  • In terms of their metabolism , Geobacter are anaerobes ; contact with oxygen is sometimes tolerated (aerotolerance in G. anodireducens ).
  • Geobacter are dissimilatory iron reducers. You can couple the oxidation of acetate as an electron donor to the reduction of trivalent iron [Fe (III)] as an electron acceptor . In addition , many other electron donors (e.g. hydrogen , various organic acids ) and electron acceptors (e.g. tetravalent manganese [Mn (IV)], antraquinone -2 ) are possible , depending on the type of Geobacter or the strain used , 6- disulfonate , fumarate , malate , sulfur ).

Special features of electron transfer

Geobacter - cells may in many cases electron extracellularly (ie outside the cell transfer); this has already been found in the first isolated strain of this genus, as it was able to reduce amorphous iron oxide under anaerobic conditions to extracellular, fine-grain magnetite . The point of electron transfer from or to the outside is the use of redox reactions for the energy gain of cells. In the case of amorphous iron oxide, for example, the absorption of this insoluble terminal electron acceptor into the cell is not possible, so the electrons are released to the outside.

Geobacter species use direct electron transfer between species (DIET) as a variant of the syntrophy that was first described for G. metallireducens and G. sulfurreducens . In DIET, biological structures create a path for the extracellular exchange of electrons from cell to cell, and several DIET relationships are known for G. metallireducens : to another Geobacter species (to G. sulfurreducens ,) and to two archaea (to Methanosarcina barkeri , and to Methanosaeta harundinacea ).

A common alternative to DIET in bacteria and archaea is the hydrogen transfer between species: one partner oxidizes organic material and reduces protons to hydrogen with the resulting electrons and the other partner uses the hydrogen as an electron donor and reduces a terminal electron acceptor with the electrons ( e.g. in the bacterium Pelobacter carbinolicus and the archaeon Methanosarcina barkeri ). One can assume that especially with Geobacter species and their relatives ( Geobactereaceae ) combinations of direct and indirect variants of electron transfer occur. There are studies on electron transfer between species through the support of electrically (partially) conductive material such as magnetite, granular activated carbon, biochar and carbon fiber fabric.

Geobacter species can develop pili , which act as microbial nanowires and are then called "e-pili" (e.g.). Studies have shown that in DIET between G. metallireducens and G. sulfurreducens, E-pili can occur in both partners, but are only necessary on the side of the electron donor partner ( G. metallireducens ), while the electron acceptor partner ( G. sulfurreducens ) does not necessarily have to train them.

Systematics

Geobacter is in 1993 by Lovley et al. described as a genus together with the type species Geobacter metallireducens and recognized in 1995 by the International Association of Microbiological Societies ( IUMS ).

The 16S rRNA - sequence pointed Geobacter as a member of Deltaproteobacteria out.

Geobacter is the type genus of the Geobacteriacea family, which Holmes et al. has been described and recognized. A later, renewed description of this family also refers to Geobacter as a type genus (description 2005 and recognition 2006).

The current classification and nomenclature can be seen in the LPSN . Geobacter currently comprises 19 species (accessed 2019-05).

meaning

Due to their anaerobic , chemoorganotrophic metabolism, Geobacter species are important in underground ecosystems. An investigation of agricultural soil, for example, provided indications that Geobacter species in soy fields in the Argentine pampas have a major influence on microbial nitrogen fixation .

Since Geobacter styles are often Exoelektrogene and an anaerobic metabolism chemoorganotrophic, have applications offer based on the oxidation of toxic , organic compounds , the reduction of heavy metals , or the production of energy are focused. Most efforts on these topics can be found for the two Geobacter species G. metallireducens and G. sulfurreducens .

There are studies on the question of which types of microbes prefer to take on a given task and which Geobacter species favor in generating electricity from household wastewater (e.g.). In technical applications, the properties of the microbes are sometimes both useful and hindering: in G. lovleyi, for example, its anaerobic metabolism enables energy to be generated with fuel cells that are effective in artificial wetlands, but on the other hand its low tolerance to oxygen can prevent its growth limit.

It is possible that different tasks can be combined with one another, e.g. B. Pollutant degradation and energy generation : in an investigation into the use of microbial fuel cells for the degradation of oxytetracycline , in which both electrodes ( anode and cathode ) had a biocompatible surface, cells typical of Geobacter remained after the biofilm had matured on the anode.

Due to their ability to reduce metals, Geobacter species have become interesting for the conversion of toxic and radioactive heavy metals , such as uranium . Geobacter reduce soluble, hexavalent uranyl cations [U (VI)], so that insoluble particles with tetravalent uranium [U (IV)] arise. The pili not only act as a reductase, but also keep the bacterial cells at a distance from the uranium, which does not have to be ingested.

Geobacter can enter into syntrophic relationships with methane-forming archaea by supplying electrons for methanogenesis via electrically conductive pili (e-pili, microbial nanowires ) . Therefore, it has often been investigated how the addition of conductive material affects methanogenesis (e.g.). In an overview, it is discussed that not all observable effects have to be automatically due to a direct electron transfer between species (DIET), especially since DIET only for two pairs (co-cultures: G. metallireducens - Methanosarcina barkeri and G. metallireducens - Methanosaeta harundinacea ) has been proven clean.

Databases

Remarks

  1. a b Extracellular conversion of amorphous iron oxide to magnetite by microbes: The amorphous iron oxide is an insoluble, chemical compound that has a low degree of crystallization and is extracellular, i.e. outside the cells of microorganisms . The reduction of Fe (III) to Fe (II), i.e. the transfer of electrons to trivalent iron , produces magnetite , an iron oxide made from bivalent and trivalent iron with a crystalline structure.
  2. a b c iron reducer: microorganism that reduces iron , generally trivalent iron [Fe (III)] to bivalent iron [Fe (II)]. The dissimilatory iron reduction is also called iron breathing. See also Iron # External Electron Donor and Acceptor .
  3. a b DIET, direct interspecies electron transfer . Immediate electron transfer between species. Use of the abbreviation or the term: Wang et al. 2016, PMID 26973614 .
  4. Exoelektrogen: A "Exoelektrogener" is a microorganism , the electron transfer to outside the cell or from outside the cell in a position. See also Microbial Fuel Cell # structure , en: Exoelectrogenic .

Individual evidence

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